Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 85374249

GI number: 85374249

Start: 1474031

End: 1474900

Strand: Direct

Name: ypfJ [H]

Synonym: ELI_07110

Alternate gene names: 85374249

Gene position: 1474031-1474900 (Clockwise)

Preceding gene: 85374243

Following gene: 85374250

Centisome position: 48.29

GC content: 63.1

Gene sequence:

>870_bases
ATGCGGCTCAATCCGTTCGATACCAGCAAGATACGCGTACGTTCGAGCGGTGGTGGCGGATTGCCGGGAGGCAAGGCCGG
CGGCATCGGGTGCGGGACCTTGGTGATTGCCCTGATCGGCGCGGTCGTATTCGGTGTCGACCCGATGCAGACGATCGGGG
TTGTCGAAGGTGTGCAACAGGGCGCATCGATTGAGCAGCGTGGCGGAGACTTGAGCGAGCAGGAGGTCTGCACCAGCGGC
GAATATGCGCGCGAGGCCTGCAACGCGCTCACATCGCTCAACGAGACCTGGGCGCCCGAATTCCAGCGCGCGGGCATCCG
ATTCCAGGATCCGGTACTCGATCTCTATCGCAACGGTCGCGTCAATACCGAAGGCTGCGGCAGCGCTAGTTCGGCCGCCG
GCCCGTTCTATTGCCCGGCCGACATGGGGATCTATATCGACACCAGCTTTTACGACCAGCTCGCCCGCATGGCCGGTACC
GGCGGAGACTTCGCGCGCTATTACGTGATCGCGCACGAATACGGCCACCATATCCAGAACCTGACCGGGCTGGCAGGGCA
GGTTCGCAGTCTGCAGCAGCAGAACCCGGGACGCGCCAACGATCTGCAGGTGCGCATGGAATTGCAGGCCGACTGCTATG
CCGGGGTTTGGGCCGGGAAGAACCGCAATCTGATCGAACCGGGCGACATGCAGGAAGGCTTGCAGGCTGCGAGTTCGATC
GGCGACGATACGCTGCAGCGCCGTGCGGGCGGTCGGATCGATCCGGAGAGCTTCACGCACGGTACAAGTGCGCAGCGTAT
GCAGGCTTTGCGTGCGGGCCTCGACAGTGCCGATGACACCGTGTGCGACCAGTATTTCGATTTCAGGTGA

Upstream 100 bases:

>100_bases
GGGTTCTCCGGTGAATTGAATGGACGCGAGGGTCGTTTTGCGGCCAAAACCGCCCCTGTCCAGCCAAAACAGGCGGCGAA
CGTACGAAGGGGACAGGATA

Downstream 100 bases:

>100_bases
TCCAATGCACAGATTTTCGCTTCTCGCTCTCCCCTTGGTCCTGATCGGCGCGAGTGCCGCCTCGCAGGACGAGCCGAAAC
GCGTCGACAAGGCTCCCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRLNPFDTSKIRVRSSGGGGLPGGKAGGIGCGTLVIALIGAVVFGVDPMQTIGVVEGVQQGASIEQRGGDLSEQEVCTSG
EYAREACNALTSLNETWAPEFQRAGIRFQDPVLDLYRNGRVNTEGCGSASSAAGPFYCPADMGIYIDTSFYDQLARMAGT
GGDFARYYVIAHEYGHHIQNLTGLAGQVRSLQQQNPGRANDLQVRMELQADCYAGVWAGKNRNLIEPGDMQEGLQAASSI
GDDTLQRRAGGRIDPESFTHGTSAQRMQALRAGLDSADDTVCDQYFDFR

Sequences:

>Translated_289_residues
MRLNPFDTSKIRVRSSGGGGLPGGKAGGIGCGTLVIALIGAVVFGVDPMQTIGVVEGVQQGASIEQRGGDLSEQEVCTSG
EYAREACNALTSLNETWAPEFQRAGIRFQDPVLDLYRNGRVNTEGCGSASSAAGPFYCPADMGIYIDTSFYDQLARMAGT
GGDFARYYVIAHEYGHHIQNLTGLAGQVRSLQQQNPGRANDLQVRMELQADCYAGVWAGKNRNLIEPGDMQEGLQAASSI
GDDTLQRRAGGRIDPESFTHGTSAQRMQALRAGLDSADDTVCDQYFDFR
>Mature_289_residues
MRLNPFDTSKIRVRSSGGGGLPGGKAGGIGCGTLVIALIGAVVFGVDPMQTIGVVEGVQQGASIEQRGGDLSEQEVCTSG
EYAREACNALTSLNETWAPEFQRAGIRFQDPVLDLYRNGRVNTEGCGSASSAAGPFYCPADMGIYIDTSFYDQLARMAGT
GGDFARYYVIAHEYGHHIQNLTGLAGQVRSLQQQNPGRANDLQVRMELQADCYAGVWAGKNRNLIEPGDMQEGLQAASSI
GDDTLQRRAGGRIDPESFTHGTSAQRMQALRAGLDSADDTVCDQYFDFR

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=268, Percent_Identity=43.6567164179104, Blast_Score=207, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 30933; Mature: 30933

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNPFDTSKIRVRSSGGGGLPGGKAGGIGCGTLVIALIGAVVFGVDPMQTIGVVEGVQQ
CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GASIEQRGGDLSEQEVCTSGEYAREACNALTSLNETWAPEFQRAGIRFQDPVLDLYRNGR
CCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCHHCCCHHHHCCCCCCCHHHHHHHCCC
VNTEGCGSASSAAGPFYCPADMGIYIDTSFYDQLARMAGTGGDFARYYVIAHEYGHHIQN
CCCCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
LTGLAGQVRSLQQQNPGRANDLQVRMELQADCYAGVWAGKNRNLIEPGDMQEGLQAASSI
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHEEECCCCCCCCCCCHHHHHHHHHHC
GDDTLQRRAGGRIDPESFTHGTSAQRMQALRAGLDSADDTVCDQYFDFR
CHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRLNPFDTSKIRVRSSGGGGLPGGKAGGIGCGTLVIALIGAVVFGVDPMQTIGVVEGVQQ
CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GASIEQRGGDLSEQEVCTSGEYAREACNALTSLNETWAPEFQRAGIRFQDPVLDLYRNGR
CCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCHHCCCHHHHCCCCCCCHHHHHHHCCC
VNTEGCGSASSAAGPFYCPADMGIYIDTSFYDQLARMAGTGGDFARYYVIAHEYGHHIQN
CCCCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
LTGLAGQVRSLQQQNPGRANDLQVRMELQADCYAGVWAGKNRNLIEPGDMQEGLQAASSI
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHEEECCCCCCCCCCCHHHHHHHHHHC
GDDTLQRRAGGRIDPESFTHGTSAQRMQALRAGLDSADDTVCDQYFDFR
CHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]