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The map label for this gene is lipB [H]

Identifier: 85374074

GI number: 85374074

Start: 1296736

End: 1297503

Strand: Direct

Name: lipB [H]

Synonym: ELI_06235

Alternate gene names: 85374074

Gene position: 1296736-1297503 (Clockwise)

Preceding gene: 85374073

Following gene: 85374075

Centisome position: 42.48

GC content: 58.59

Gene sequence:

>768_bases
GTGAAAGTCGTGATGCTCGGAACGGGTACGTCGACCGGCGTGCCGCGCATCAATGGCGACTGGGGCGATTGCGATCCGAA
CGAGCCGCGCAACCGCCGCAGCCGTGTTTCGATTTTGCTGGAAAACAAGCAAGGTCAACGGGTTCTGGTCGATACTTCGA
CCGATTTACGCGCCCAGTTTCTCGCCAACGGCATCACCAGCCTCGATGGCGTGTTTTGGACCCACGACCACGCCGATCAC
TGCCACGGCATCGATGACCTGCGCTCGTTTCGCTACGGCCGCTCGGCACCGCTGCCGGGCTTTGCCAGCGAAAGAACCTG
CGCCAACCTGCGCAAGCGCTTCTCTTTCGTTTTCGCCGGCGAGCATGGCTATCCAACTATCGTTTCGCTGCAGGAACTCG
ATCGACAGGCGATGCATGCCGGGTTCGGTCTGTCATGGGTGGAAATGCCACACGGGCCGACTTATTCGACCGGTTTCGTC
TTCGAAAGCGACGGAAAGACAATTGGATACGCGACGGATTTCAGCGAGATCACCGATGCCATGCTCGATACCTTCAAGGG
TATCGACATCCTGGTCTGCGACTGCCTGCGCCGCGAACCGCATCCGACGCATGCGCATCTCGGCATGGCGCTGCAGTTCA
AGCAGCGCACCAAGGCCAAGCGCATGATCCTGACCCATATGGACAAGAGTATGGATTATCGCAGCCTGTGCGATGAAGTT
CCCAAGGATGTGATCGTCGGGTACGATGGGCTTGAGGTAGAAGCATGA

Upstream 100 bases:

>100_bases
ATACGGCGGAATTCCTGGCCGACCTGCGCGGCGAAACGCTGGAACATCTCGCCGAAACCACGACCCGCAACTTCTTCGAA
CTGTTTGACAGAGCGGCCGC

Downstream 100 bases:

>100_bases
ATCAGTTCGACACCGTGCAGATCATCGCCTTGCTGGGCTGGCTCGTTTTGGCTGGCGGCGCTCTGGCATCCTACCGACTG
AGCTGGAAAAGCGGCCTGCG

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: Lipoate-protein ligase B; Lipoyl/octanoyl transferase; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKVVMLGTGTSTGVPRINGDWGDCDPNEPRNRRSRVSILLENKQGQRVLVDTSTDLRAQFLANGITSLDGVFWTHDHADH
CHGIDDLRSFRYGRSAPLPGFASERTCANLRKRFSFVFAGEHGYPTIVSLQELDRQAMHAGFGLSWVEMPHGPTYSTGFV
FESDGKTIGYATDFSEITDAMLDTFKGIDILVCDCLRREPHPTHAHLGMALQFKQRTKAKRMILTHMDKSMDYRSLCDEV
PKDVIVGYDGLEVEA

Sequences:

>Translated_255_residues
MKVVMLGTGTSTGVPRINGDWGDCDPNEPRNRRSRVSILLENKQGQRVLVDTSTDLRAQFLANGITSLDGVFWTHDHADH
CHGIDDLRSFRYGRSAPLPGFASERTCANLRKRFSFVFAGEHGYPTIVSLQELDRQAMHAGFGLSWVEMPHGPTYSTGFV
FESDGKTIGYATDFSEITDAMLDTFKGIDILVCDCLRREPHPTHAHLGMALQFKQRTKAKRMILTHMDKSMDYRSLCDEV
PKDVIVGYDGLEVEA
>Mature_255_residues
MKVVMLGTGTSTGVPRINGDWGDCDPNEPRNRRSRVSILLENKQGQRVLVDTSTDLRAQFLANGITSLDGVFWTHDHADH
CHGIDDLRSFRYGRSAPLPGFASERTCANLRKRFSFVFAGEHGYPTIVSLQELDRQAMHAGFGLSWVEMPHGPTYSTGFV
FESDGKTIGYATDFSEITDAMLDTFKGIDILVCDCLRREPHPTHAHLGMALQFKQRTKAKRMILTHMDKSMDYRSLCDEV
PKDVIVGYDGLEVEA

Specific function: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate

COG id: COG1235

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the lipB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR004143
- InterPro:   IPR000544
- InterPro:   IPR020605 [H]

Pfam domain/function: PF03099 BPL_LipA_LipB; PF00753 Lactamase_B [H]

EC number: =2.3.1.181 [H]

Molecular weight: Translated: 28557; Mature: 28557

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVMLGTGTSTGVPRINGDWGDCDPNEPRNRRSRVSILLENKQGQRVLVDTSTDLRAQF
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCEEEEEEECCCCCEEEEECCCHHHHHH
LANGITSLDGVFWTHDHADHCHGIDDLRSFRYGRSAPLPGFASERTCANLRKRFSFVFAG
HHCCHHHHCCEEEECCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEEEEEEC
EHGYPTIVSLQELDRQAMHAGFGLSWVEMPHGPTYSTGFVFESDGKTIGYATDFSEITDA
CCCCCCEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCEEEEECCHHHHHHH
MLDTFKGIDILVCDCLRREPHPTHAHLGMALQFKQRTKAKRMILTHMDKSMDYRSLCDEV
HHHHHCCCHHHHHHHHCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PKDVIVGYDGLEVEA
CHHHEECCCCEEECC
>Mature Secondary Structure
MKVVMLGTGTSTGVPRINGDWGDCDPNEPRNRRSRVSILLENKQGQRVLVDTSTDLRAQF
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCEEEEEEECCCCCEEEEECCCHHHHHH
LANGITSLDGVFWTHDHADHCHGIDDLRSFRYGRSAPLPGFASERTCANLRKRFSFVFAG
HHCCHHHHCCEEEECCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEEEEEEC
EHGYPTIVSLQELDRQAMHAGFGLSWVEMPHGPTYSTGFVFESDGKTIGYATDFSEITDA
CCCCCCEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCEEEEECCHHHHHHH
MLDTFKGIDILVCDCLRREPHPTHAHLGMALQFKQRTKAKRMILTHMDKSMDYRSLCDEV
HHHHHCCCHHHHHHHHCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHC
PKDVIVGYDGLEVEA
CHHHEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12949112 [H]