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The map label for this gene is ctaD [H]

Identifier: 84625576

GI number: 84625576

Start: 4417429

End: 4419033

Strand: Reverse

Name: ctaD [H]

Synonym: XOO_3919

Alternate gene names: 84625576

Gene position: 4419033-4417429 (Counterclockwise)

Preceding gene: 84625577

Following gene: 84625575

Centisome position: 89.45

GC content: 59.81

Gene sequence:

>1605_bases
ATGGCGCATACCGCAGTCGATCACCACGGACACCACCAGCCCGGTTTCGTCGAGCGCTGGTTCTTTTCGACCAATCACAA
GGACATCGGCACGCTGTACCTGCTGTTTTCCTTCGTGATGTTCATCATCGGCGCGGCGATGAGCGTGGTGATTCGCGCCG
AATTGATGCAGCCCGGCTTGCAGTTCGTCAAACCGGAATTCTTCAACCAGATGACCACCGTGCATGCACTGGTGATGATC
TTCGGCGGCGTGATGCCGGCCTTCGTTGGCTTGGCCAACTGGATGATCCCGTTGCAGATCGGCGCACCGGACATGGCGTT
GCCGCGCATGAACAACTGGTCGTTCTGGCTGCTGCCGGTCGCCTTTACGCTGCTGCTGCTGACGCTGTTTCTGCCGGGCG
GCGGACCAGCGGGTGGCTGGACCTTGTACCCGCCGCTGTCGCTGCAAGGCGGCTACAACGTGGCTTTCAGCGTATTTGCG
ATCCATGTGGCCGGCGTCAGTTCGATCATGGGCGCGATCAACATCATCGCCACCGTGCTCAACATGCGCGCGCCGGGCAT
CGATCTGTTGAAGATGCCGATCTTCTGCTGGGCCTGGCTGATTACCGCCTTCCTGCTGATTGCGGTGATGCCGGTGCTGG
CCGGCGCAGTGACCATGTTGCTCACAGACAAATTCTTCGGCACCAGTTTCTTCAACGCGGCCGGCGGCGGCGACCCGGTG
ATGTATCAGCACATCTTCTGGTTCTTTGGGCACCCCGAGGTGTACATCATGATCCTGCCGGCGTTCGGCGTGGTCAGCGA
AATCATCCCGACCTTCAGCCGCAAGCCGCTGTTCGGTTACCAGGCGATGGTGTACGCCATCGCGGCGATCGCATTCCTGA
GCTTCATCGTGTGGGCGCACCACATGTTCACCGTGGGCATGCCGCTCGGTGGCGAAATCTATTTCATGTTCGCCACGATG
CTGATTTCCATCCCGACCGGGGTGAAGGTGTTCAACTGGGTCAGCACGATGTGGAAAGGCTCGCTGACCTTCGAATCGCC
GATGTTGTGGGCAGTGGCGTTCGTGATCCTCTTCAGCATCGGTGGCTTTTCCGGCCTGATGCTGGCGATCGTGCCAGCCG
ACTTCCAGTATCACGACACCTATTTCGTAGTGGCGCATTTTCACTACGTGCTGGTGACCGGCGCGGTGTTTGCGCTGATT
GCGGCGGTGTATTACTGGTGGCCCAAGTGGACCGGGCGGATCTACAACGAAACCTGGGCCAAGGTGCACTTCTGGTGGAC
GATGGTGTTCGTCAATCTGCTGTTCTTCCCGCAGCACTTCCTCGGCCTGGCCGGCATGCCGCGGCGTATTCCTGATTACA
ACGTAGTATTCGCCGACTGGAATCTGGTCAGTTCGATCGGTGCGTTCGGTATGTTCGTCACGCCGTTCCTGATGGCCGCG
ATTCTGCTTTCCTCGCTGCGTAGTGGCGCGCGGGCAGACGCGCGTGCCTGGGAAGGTGCCAAGGGCCTGGAATGGACGGT
TCCTTCGCCTGCCCCGGCGCATACCTTTACCGTGCCGCCGGTGATCAAGCCTGGAGACCTTGCGCATGAAGACATCGGTC
ATTGA

Upstream 100 bases:

>100_bases
CGGCGACGCCTGCAGGTGATGCCGCGCCTGCCGCAGCTGCTACACCGACCGCCGCTCTTTAATCGCTCGCAACCGCTCGT
TTCGCAGAGGTCGTTCCGTC

Downstream 100 bases:

>100_bases
GTCCGCCTCGGAGCCGGCGGTGACGCGTCTGTTATCTGCAGCCGAACGGCAGGCGCAGCAGCGCCGCGCCGTGCGTCGCA
CTGCGATCACGGTCGGGATC

Product: cytochrome C oxidase subunit I

Products: NA

Alternate protein names: Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MAHTAVDHHGHHQPGFVERWFFSTNHKDIGTLYLLFSFVMFIIGAAMSVVIRAELMQPGLQFVKPEFFNQMTTVHALVMI
FGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPVAFTLLLLTLFLPGGGPAGGWTLYPPLSLQGGYNVAFSVFA
IHVAGVSSIMGAINIIATVLNMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPV
MYQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYAIAAIAFLSFIVWAHHMFTVGMPLGGEIYFMFATM
LISIPTGVKVFNWVSTMWKGSLTFESPMLWAVAFVILFSIGGFSGLMLAIVPADFQYHDTYFVVAHFHYVLVTGAVFALI
AAVYYWWPKWTGRIYNETWAKVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAA
ILLSSLRSGARADARAWEGAKGLEWTVPSPAPAHTFTVPPVIKPGDLAHEDIGH

Sequences:

>Translated_534_residues
MAHTAVDHHGHHQPGFVERWFFSTNHKDIGTLYLLFSFVMFIIGAAMSVVIRAELMQPGLQFVKPEFFNQMTTVHALVMI
FGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPVAFTLLLLTLFLPGGGPAGGWTLYPPLSLQGGYNVAFSVFA
IHVAGVSSIMGAINIIATVLNMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPV
MYQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYAIAAIAFLSFIVWAHHMFTVGMPLGGEIYFMFATM
LISIPTGVKVFNWVSTMWKGSLTFESPMLWAVAFVILFSIGGFSGLMLAIVPADFQYHDTYFVVAHFHYVLVTGAVFALI
AAVYYWWPKWTGRIYNETWAKVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAA
ILLSSLRSGARADARAWEGAKGLEWTVPSPAPAHTFTVPPVIKPGDLAHEDIGH
>Mature_533_residues
AHTAVDHHGHHQPGFVERWFFSTNHKDIGTLYLLFSFVMFIIGAAMSVVIRAELMQPGLQFVKPEFFNQMTTVHALVMIF
GGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPVAFTLLLLTLFLPGGGPAGGWTLYPPLSLQGGYNVAFSVFAI
HVAGVSSIMGAINIIATVLNMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPVM
YQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYAIAAIAFLSFIVWAHHMFTVGMPLGGEIYFMFATML
ISIPTGVKVFNWVSTMWKGSLTFESPMLWAVAFVILFSIGGFSGLMLAIVPADFQYHDTYFVVAHFHYVLVTGAVFALIA
AVYYWWPKWTGRIYNETWAKVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAAI
LLSSLRSGARADARAWEGAKGLEWTVPSPAPAHTFTVPPVIKPGDLAHEDIGH

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=513, Percent_Identity=50.682261208577, Blast_Score=475, Evalue=1e-134,
Organism=Escherichia coli, GI1786634, Length=518, Percent_Identity=39.7683397683398, Blast_Score=375, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6226519, Length=532, Percent_Identity=45.8646616541353, Blast_Score=476, Evalue=1e-135,
Organism=Saccharomyces cerevisiae, GI6226524, Length=324, Percent_Identity=49.3827160493827, Blast_Score=322, Evalue=1e-88,
Organism=Saccharomyces cerevisiae, GI6226523, Length=249, Percent_Identity=44.9799196787149, Blast_Score=205, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 59358; Mature: 59227

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTAVDHHGHHQPGFVERWFFSTNHKDIGTLYLLFSFVMFIIGAAMSVVIRAELMQPGL
CCCCCCCCCCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QFVKPEFFNQMTTVHALVMIFGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPV
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCEEHHHH
AFTLLLLTLFLPGGGPAGGWTLYPPLSLQGGYNVAFSVFAIHVAGVSSIMGAINIIATVL
HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPV
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCH
MYQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYAIAAIAFLSFIVWAH
HHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HMFTVGMPLGGEIYFMFATMLISIPTGVKVFNWVSTMWKGSLTFESPMLWAVAFVILFSI
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GGFSGLMLAIVPADFQYHDTYFVVAHFHYVLVTGAVFALIAAVYYWWPKWTGRIYNETWA
CCHHCEEEEEEECCCEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
ILLSSLRSGARADARAWEGAKGLEWTVPSPAPAHTFTVPPVIKPGDLAHEDIGH
HHHHHHHCCCCCCHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AHTAVDHHGHHQPGFVERWFFSTNHKDIGTLYLLFSFVMFIIGAAMSVVIRAELMQPGL
CCCCCCCCCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QFVKPEFFNQMTTVHALVMIFGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPV
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCEEHHHH
AFTLLLLTLFLPGGGPAGGWTLYPPLSLQGGYNVAFSVFAIHVAGVSSIMGAINIIATVL
HHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPV
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCH
MYQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYAIAAIAFLSFIVWAH
HHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HMFTVGMPLGGEIYFMFATMLISIPTGVKVFNWVSTMWKGSLTFESPMLWAVAFVILFSI
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GGFSGLMLAIVPADFQYHDTYFVVAHFHYVLVTGAVFALIAAVYYWWPKWTGRIYNETWA
CCHHCEEEEEEECCCEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KVHFWWTMVFVNLLFFPQHFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
ILLSSLRSGARADARAWEGAKGLEWTVPSPAPAHTFTVPPVIKPGDLAHEDIGH
HHHHHHHCCCCCCHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8117073 [H]