Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
---|---|
Accession | NC_007705 |
Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is sam [H]
Identifier: 84625464
GI number: 84625464
Start: 4311313
End: 4312188
Strand: Reverse
Name: sam [H]
Synonym: XOO_3807
Alternate gene names: 84625464
Gene position: 4312188-4311313 (Counterclockwise)
Preceding gene: 84625470
Following gene: 84625461
Centisome position: 87.29
GC content: 62.21
Gene sequence:
>876_bases ATGTTGAAGGGTGTGGTGTTGGGGTTCGCCTGCTATGCGGCCTATTCGATCAGCGATGCGTTCGTGAAGCTGCTCGAAGG TACGCTGCCAGTCTACGAGGTGCTGTTTCTGGGCGCGCTGTTGATGCTGCTGGCGGTGCCGTTCCTGAAAAAGCCCGACG ACCAGCTACGCGAACTGGTGATGGCCAAGCAGCCCGCACTGTGGCTGCTGCGCGCGCTCACCGGTGCCATCGGCAATCTC ACCTCGGTGATCGCCTTTACCACTCTGCCGATGGCCGAAGCGTTCGCGCTGATCTTTCTGATGCCGATCTTCGTCACCGT GCTGTCGGTGATCTTCCTCAAGGAAGACGTGCACTGGCGACGCTGGTCGGCGGTGATCGTCGGCTTCATCGGTGTGCTGA TCGTGCTGCGTCCCGGCTTTCGGCACCTCACCCAAGGGCATGTGGCGGCGATTGTGTGCGGCCTGGTCGGTGCCATCTCG GTGATCGCCTTGCGCATGGCCGGGCATGGTGAAAAGCGCTTGACCTTGTATGGCGCTGGCGTGATCGGCCCGTTGATAAT GGGCGGGATCATGATGCTGCCGACCTTCGTCTGGCCCACGCTGTCCCAATGGGGCCTGCTGGCGGGTTACGGTTTGCTCG CCGGGCTTGCCGCCATCTGCATGATGTACGCCACGCGCATGTCCCCGGTCAGCCTGGTCGCACCGACCCAATACAGCCAG ATGCTATGGGCCATCGCCTTCGGCTACCTGCTGTTTCATGATCATCTGGACTGGCCGATGGCCGTGGGCATCGCGCTGAT CCTGGGCGCTGGTCTGTTCACCCTGGTGCGTGAGGAACAGGTGTCGCGTTGGTGGCGGCGGACGAAGATCGTGTGA
Upstream 100 bases:
>100_bases CGACTGCGCACGCCGTTTCGTTGACACACGCGGCACCGCATACTGCATGCAATCCGTATCGACACCTCGTTCGATCGGCG TCAACTGTGGGGTGTGGGCA
Downstream 100 bases:
>100_bases GTGCTGCGTCGTGCCGGCCGGTTGACTGGCAGTGGGGCGGGATTCGAAAAAGCACCGGTCCGTCAGGGGCACAGACATCG AGGCAGCTGCGATCCCCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MLKGVVLGFACYAAYSISDAFVKLLEGTLPVYEVLFLGALLMLLAVPFLKKPDDQLRELVMAKQPALWLLRALTGAIGNL TSVIAFTTLPMAEAFALIFLMPIFVTVLSVIFLKEDVHWRRWSAVIVGFIGVLIVLRPGFRHLTQGHVAAIVCGLVGAIS VIALRMAGHGEKRLTLYGAGVIGPLIMGGIMMLPTFVWPTLSQWGLLAGYGLLAGLAAICMMYATRMSPVSLVAPTQYSQ MLWAIAFGYLLFHDHLDWPMAVGIALILGAGLFTLVREEQVSRWWRRTKIV
Sequences:
>Translated_291_residues MLKGVVLGFACYAAYSISDAFVKLLEGTLPVYEVLFLGALLMLLAVPFLKKPDDQLRELVMAKQPALWLLRALTGAIGNL TSVIAFTTLPMAEAFALIFLMPIFVTVLSVIFLKEDVHWRRWSAVIVGFIGVLIVLRPGFRHLTQGHVAAIVCGLVGAIS VIALRMAGHGEKRLTLYGAGVIGPLIMGGIMMLPTFVWPTLSQWGLLAGYGLLAGLAAICMMYATRMSPVSLVAPTQYSQ MLWAIAFGYLLFHDHLDWPMAVGIALILGAGLFTLVREEQVSRWWRRTKIV >Mature_291_residues MLKGVVLGFACYAAYSISDAFVKLLEGTLPVYEVLFLGALLMLLAVPFLKKPDDQLRELVMAKQPALWLLRALTGAIGNL TSVIAFTTLPMAEAFALIFLMPIFVTVLSVIFLKEDVHWRRWSAVIVGFIGVLIVLRPGFRHLTQGHVAAIVCGLVGAIS VIALRMAGHGEKRLTLYGAGVIGPLIMGGIMMLPTFVWPTLSQWGLLAGYGLLAGLAAICMMYATRMSPVSLVAPTQYSQ MLWAIAFGYLLFHDHLDWPMAVGIALILGAGLFTLVREEQVSRWWRRTKIV
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31888; Mature: 31888
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKGVVLGFACYAAYSISDAFVKLLEGTLPVYEVLFLGALLMLLAVPFLKKPDDQLRELV CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH MAKQPALWLLRALTGAIGNLTSVIAFTTLPMAEAFALIFLMPIFVTVLSVIFLKEDVHWR HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RWSAVIVGFIGVLIVLRPGFRHLTQGHVAAIVCGLVGAISVIALRMAGHGEKRLTLYGAG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH VIGPLIMGGIMMLPTFVWPTLSQWGLLAGYGLLAGLAAICMMYATRMSPVSLVAPTQYSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH MLWAIAFGYLLFHDHLDWPMAVGIALILGAGLFTLVREEQVSRWWRRTKIV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLKGVVLGFACYAAYSISDAFVKLLEGTLPVYEVLFLGALLMLLAVPFLKKPDDQLRELV CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH MAKQPALWLLRALTGAIGNLTSVIAFTTLPMAEAFALIFLMPIFVTVLSVIFLKEDVHWR HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RWSAVIVGFIGVLIVLRPGFRHLTQGHVAAIVCGLVGAISVIALRMAGHGEKRLTLYGAG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH VIGPLIMGGIMMLPTFVWPTLSQWGLLAGYGLLAGLAAICMMYATRMSPVSLVAPTQYSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH MLWAIAFGYLLFHDHLDWPMAVGIALILGAGLFTLVREEQVSRWWRRTKIV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA