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The map label for this gene is ydaM [H]

Identifier: 84625443

GI number: 84625443

Start: 4281519

End: 4282016

Strand: Reverse

Name: ydaM [H]

Synonym: XOO_3786

Alternate gene names: 84625443

Gene position: 4282016-4281519 (Counterclockwise)

Preceding gene: 84625444

Following gene: 84625442

Centisome position: 86.68

GC content: 63.05

Gene sequence:

>498_bases
GTGATCCTGCGGCTGTTTGCGGGCGATGCCGAATCCAGCGCGGAACAGGGCGTGTGGCTGGGCATCGTGGACATCGATCA
CTTCAAACGCGTCAACGACACCTTCGGGCATCTGTACGGCGACGAAGTGCTGCTATTGGTCGCCCAGCTGATGCAACGTG
CGTTTCGCCAGCACGACCTGCTGTTCCGCTTCGGCGGCGAAGCGTTCGTGATCGTAGTGCGCGGCGTGGACCGCGACACC
GCCGTGAGTCTGTTCGAGCGGTTACGGCTGGCCGTGGCCCAGCACCTGTTTCCGCAGGTGGGGCAGGTCACGCTCAGTAC
CGGCATCGTCGAACTGACCCACGGCCGGCTGATCAGCGAAATGCTGGACGAAGCCGACAAGGCGCTGTACTGGGCCAAGC
AACATGGCCGCAATCGCGCGGCGCTGTATGCCGAGCTGATTGCCAGCGGGCAGTTGCAGCAGATTGCGCAAGCCGTAGGC
AGCGTCGATCTGTTCTAA

Upstream 100 bases:

>100_bases
GCGCGGTTTTGCGCGCTTTTTACAGAATTACCGCAGCCTGCTCGACGACGCCCAGCGCGATGCACTGACCTGCCTGCGCA
ACCGCAAAACGTTCGACGAT

Downstream 100 bases:

>100_bases
GCGCAGCGCTGCGCTGAAACAGGCGAGCGGCCCACTCGGTGCAGGCAAACGCACCGACCTTCATCCGGTCACCGCGCAAG
CGCACTGCACGCATCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MILRLFAGDAESSAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDT
AVSLFERLRLAVAQHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRNRAALYAELIASGQLQQIAQAVG
SVDLF

Sequences:

>Translated_165_residues
MILRLFAGDAESSAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDT
AVSLFERLRLAVAQHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRNRAALYAELIASGQLQQIAQAVG
SVDLF
>Mature_165_residues
MILRLFAGDAESSAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDT
AVSLFERLRLAVAQHLFPQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRNRAALYAELIASGQLQQIAQAVG
SVDLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=124, Percent_Identity=40.3225806451613, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=129, Percent_Identity=38.7596899224806, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=141, Percent_Identity=37.5886524822695, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=126, Percent_Identity=34.9206349206349, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=132, Percent_Identity=32.5757575757576, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=137, Percent_Identity=32.1167883211679, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=123, Percent_Identity=36.5853658536585, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787802, Length=128, Percent_Identity=32.8125, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=118, Percent_Identity=31.3559322033898, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=152, Percent_Identity=33.5526315789474, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788381, Length=144, Percent_Identity=31.25, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1787541, Length=132, Percent_Identity=30.3030303030303, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 18405; Mature: 18405

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRLFAGDAESSAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDL
CEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LFRFGGEAFVIVVRGVDRDTAVSLFERLRLAVAQHLFPQVGQVTLSTGIVELTHGRLISE
HEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
MLDEADKALYWAKQHGRNRAALYAELIASGQLQQIAQAVGSVDLF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MILRLFAGDAESSAEQGVWLGIVDIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDL
CEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LFRFGGEAFVIVVRGVDRDTAVSLFERLRLAVAQHLFPQVGQVTLSTGIVELTHGRLISE
HEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
MLDEADKALYWAKQHGRNRAALYAELIASGQLQQIAQAVGSVDLF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]