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The map label for this gene is pglA [H]

Identifier: 84625394

GI number: 84625394

Start: 4225463

End: 4225915

Strand: Reverse

Name: pglA [H]

Synonym: XOO_3737

Alternate gene names: 84625394

Gene position: 4225915-4225463 (Counterclockwise)

Preceding gene: 84625395

Following gene: 84625393

Centisome position: 85.54

GC content: 65.12

Gene sequence:

>453_bases
GTGTCCACCGACGATGCGGGCAACCGCAGCACCGACAACAGCGGCTTGCGCATCAAGACCAGCCTCGCCAAGGGCGGCCC
GGTCAGTCTGATCACCTATCGCAACACCTGCCTGTACGGCGTCAGCAGCCCGTTGGTGATCAATCCGTTCTACGCCGCCG
CAACCAGCGGCACCAAACCGACCTTCCGCCAGATCGTGGTCGATGGGCTCACAACCAGCAACGACGCTGGCGGCAAGGGC
TGCATCCTGAAAGGCTTTGATGCGCAGACACCGCTGGATCTGGTATTGGCCAACGTGGCACAAAGCGATGCGTTGATCAC
TGCCAGCAATGCACAGATCGGGCTGAGCAACAGCGCCGTCACGCCGTCGGGGACCGGCGTCACCACCGGCACCGTGGAGG
TCGGCGGCGCGGTGCCCACCTGCTCGGGTGCACCGCGCTTCCCCGCGCTGTGA

Upstream 100 bases:

>100_bases
GCGTGGAGCAGGCCGACGGCGAGCAGCAGGCCGCCCATACGCTGGTGGTCTTCGACCCGCAGGCACAGCGCCCGGACGTC
GGGTCGACACCAATGCGCTG

Downstream 100 bases:

>100_bases
TCTCGCTGGCGCGGCCGCGACCGGCCGCGCCAGACCCGCGGGCGCCAGACCCGCGAACGTACGTTTTTCAACATGGCAGA
TGGGGCTGCGGCCCCACACA

Product: putative endopolygalacturonase

Products: NA

Alternate protein names: PGA; Pectinase [H]

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSTDDAGNRSTDNSGLRIKTSLAKGGPVSLITYRNTCLYGVSSPLVINPFYAAATSGTKPTFRQIVVDGLTTSNDAGGKG
CILKGFDAQTPLDLVLANVAQSDALITASNAQIGLSNSAVTPSGTGVTTGTVEVGGAVPTCSGAPRFPAL

Sequences:

>Translated_150_residues
MSTDDAGNRSTDNSGLRIKTSLAKGGPVSLITYRNTCLYGVSSPLVINPFYAAATSGTKPTFRQIVVDGLTTSNDAGGKG
CILKGFDAQTPLDLVLANVAQSDALITASNAQIGLSNSAVTPSGTGVTTGTVEVGGAVPTCSGAPRFPAL
>Mature_149_residues
STDDAGNRSTDNSGLRIKTSLAKGGPVSLITYRNTCLYGVSSPLVINPFYAAATSGTKPTFRQIVVDGLTTSNDAGGKGC
ILKGFDAQTPLDLVLANVAQSDALITASNAQIGLSNSAVTPSGTGVTTGTVEVGGAVPTCSGAPRFPAL

Specific function: Contributes to the wilt disease production on tomato [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000743
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.15 [H]

Molecular weight: Translated: 15051; Mature: 14920

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDDAGNRSTDNSGLRIKTSLAKGGPVSLITYRNTCLYGVSSPLVINPFYAAATSGTKP
CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEECCCCCEEECCHHHCCCCCCCH
TFRQIVVDGLTTSNDAGGKGCILKGFDAQTPLDLVLANVAQSDALITASNAQIGLSNSAV
HHHHHEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCEEECCCCCC
TPSGTGVTTGTVEVGGAVPTCSGAPRFPAL
CCCCCCEEECEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STDDAGNRSTDNSGLRIKTSLAKGGPVSLITYRNTCLYGVSSPLVINPFYAAATSGTKP
CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCEEEECCCCCEEECCHHHCCCCCCCH
TFRQIVVDGLTTSNDAGGKGCILKGFDAQTPLDLVLANVAQSDALITASNAQIGLSNSAV
HHHHHEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCEEECCCCCC
TPSGTGVTTGTVEVGGAVPTCSGAPRFPAL
CCCCCCEEECEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]