Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
---|---|
Accession | NC_007705 |
Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is hsdBM [H]
Identifier: 84625386
GI number: 84625386
Start: 4215823
End: 4217613
Strand: Reverse
Name: hsdBM [H]
Synonym: XOO_3729
Alternate gene names: 84625386
Gene position: 4217613-4215823 (Counterclockwise)
Preceding gene: 84625387
Following gene: 84625385
Centisome position: 85.37
GC content: 60.8
Gene sequence:
>1791_bases ATGATGACCTTAGACGCCGCCGCAAACGTAGCTCCACTACTGACAGAGCCACTGCCTTCGCTTGCCGAACTGCCTTCACC TTCGTATCTGCGAGCGGTTCTGCGAACACAAAGCAAGGCGACTGCTGAGCGCTCACAGCTCGCGTTTGCTGAAGCCATCA CGGCACACGCCGTCATAGCCTATTGGGAGCAGCTTGGCTCAGGACTGGCCGTGCAGCCCCCCCCGAACGCGGCGCGCGAC CTTCCTGAAGCTGGTCGCCGCGCCGCAAGCCAGTTTGGGCAAGCTATTGCGCGCCTGTCTGTCGAAGACGCTGCATCTAA CCTCGGGCTACTCTACACCGCGCTCCTCCCCAGTGAGTGGCGTTCGGAGCGGGGCGTTTTTTACACCCCGCCAGCATTGG CCGAGCGGTTGCTCGACCAAGCAGAGGCGGCAGGCCTAGATTGGTCGCGTGCCCATGTGCTCGACCCAGCAGCCGGAGCA GGCGCGTTCCTTGTGCCTGCGGCCCGGCGACTACTGAAGTCCATCGTGGACTGTTCGCCAGCAGTAGCTATGCACAATCT CTCTGCCAGGCTGCGCGGCTTTGAGCTTGATCCCTTTGCGGCCTGGATGGCCCAGGTGTTCGTCGAAGCAGCAGCGCTGC CACTCATCGTGGCTTGCGGCCGGAGACCGTCCGCTGTTGTGACCGTATGCGATAGCCTCTCCATCACAAAGATAAACGGC TTCGACTTGGTTGTCGGCAATCCGCCGTTTGGCAGGCTGAAGCTGGCCGCTGAAAGGCGCGAATACTTTTCGCGAAGCCT CTACGGTCACGCTAACCTATACGGCCTGTTCATGGATCTGGCCGTGCGGCTGGCAAAGCCCGATGGCCTAGTGTCATTCC TGACGCCATCGAGCTTCCTTGCCGGGGAGTACTTCAAGAATTTGCGCGCCGTCTTGCACAAGGAAGCTCCCCCGGTCTCG CTGGACTTCGTGACGGCACGCAAGGGTGTGTTCGACGATGTGCTGCAGGAAACAGTCCTAGCCACCTATCGCAAAGGAGC AAAGCGCGCCCGCGCTGTTGTGTCCTTCATCGAAGCGCAGCCTGGCGTGCCGGTCAAAGCTGAGCCCGCTGGCGACTTCA CCTTACCGCGGAAAGCAACGGCCCCGTGGTTCCTGCCCCGGCACACCGATGAAGCAGAGCTTGCGAAGAGGCTGCGCGCC ATGTCGGCGCGCCTGGCAGATTGGGGCTACAAAGTAAGCACAGGCCCCCTCGTGTGGAACCGATTCAAGCCGCAACTGTG CGACCACGAAGAAGCTGGCACCGTGCCTCTCGTATGGGCTGAAAGCGTGACCAGCGATGGTCGTTTCGTTCCCCGAGCAG AAAAGCGGAACCACAAGCCGTTTCTACGCCTTCAGCCTGGTAACGATTGGCTGGTCGTTCGCAAGCCCTGCGTTCTGCTC CAGCGGACAACAGCGAAAGAGCAAGCTCGCCGGCTCATCGCTGCAGAGATGCCGGCATCGTTCATCAAGCGGCACGCCGG CGTCACGATTGAGAACCACCTCAATATGATGATTCCGACCGTGGAAAATCCAGCGGTGTCGCCTGCGTTGCTTGCGGCGT TTCTCAACAGCGAGGCCGCTGATCGGGCCTTCCGTTGCCTGAGCGGTAGCGTCGCGGTTTCTGCATACGAGCTTGAGAAT TTGCCCCTCCCCACAGCAAGCGACCTGAAGAAATTGGTTGGCAGCAAAGTCACGCGCGCGAGTGTCGAGAAGGCCTGCGC CAATCTGTATGCGACAGAAGGTGAAGCGTGA
Upstream 100 bases:
>100_bases GCAAGCCATAGCGAAGCAGAATAAAGGTTTGGGTTGCCTGGGTTATCCGGGACGCCGCCGAGAAGTACATCGCTGCCCAA TGGCCGCTGCCGGAGACGAA
Downstream 100 bases:
>100_bases GCTTGCCTCCCTACGTCGACCGGCTAACCATTCACCAGCGTCTGCCCCTCATCTTTCAGGACGGCACTCCCAATCGCAAC TATTGCATTCGGGAAATGGC
Product: methyltransferase homolog M.XphI
Products: NA
Alternate protein names: M.BsuBI; Adenine-specific methyltransferase BsuBI [H]
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MMTLDAAANVAPLLTEPLPSLAELPSPSYLRAVLRTQSKATAERSQLAFAEAITAHAVIAYWEQLGSGLAVQPPPNAARD LPEAGRRAASQFGQAIARLSVEDAASNLGLLYTALLPSEWRSERGVFYTPPALAERLLDQAEAAGLDWSRAHVLDPAAGA GAFLVPAARRLLKSIVDCSPAVAMHNLSARLRGFELDPFAAWMAQVFVEAAALPLIVACGRRPSAVVTVCDSLSITKING FDLVVGNPPFGRLKLAAERREYFSRSLYGHANLYGLFMDLAVRLAKPDGLVSFLTPSSFLAGEYFKNLRAVLHKEAPPVS LDFVTARKGVFDDVLQETVLATYRKGAKRARAVVSFIEAQPGVPVKAEPAGDFTLPRKATAPWFLPRHTDEAELAKRLRA MSARLADWGYKVSTGPLVWNRFKPQLCDHEEAGTVPLVWAESVTSDGRFVPRAEKRNHKPFLRLQPGNDWLVVRKPCVLL QRTTAKEQARRLIAAEMPASFIKRHAGVTIENHLNMMIPTVENPAVSPALLAAFLNSEAADRAFRCLSGSVAVSAYELEN LPLPTASDLKKLVGSKVTRASVEKACANLYATEGEA
Sequences:
>Translated_596_residues MMTLDAAANVAPLLTEPLPSLAELPSPSYLRAVLRTQSKATAERSQLAFAEAITAHAVIAYWEQLGSGLAVQPPPNAARD LPEAGRRAASQFGQAIARLSVEDAASNLGLLYTALLPSEWRSERGVFYTPPALAERLLDQAEAAGLDWSRAHVLDPAAGA GAFLVPAARRLLKSIVDCSPAVAMHNLSARLRGFELDPFAAWMAQVFVEAAALPLIVACGRRPSAVVTVCDSLSITKING FDLVVGNPPFGRLKLAAERREYFSRSLYGHANLYGLFMDLAVRLAKPDGLVSFLTPSSFLAGEYFKNLRAVLHKEAPPVS LDFVTARKGVFDDVLQETVLATYRKGAKRARAVVSFIEAQPGVPVKAEPAGDFTLPRKATAPWFLPRHTDEAELAKRLRA MSARLADWGYKVSTGPLVWNRFKPQLCDHEEAGTVPLVWAESVTSDGRFVPRAEKRNHKPFLRLQPGNDWLVVRKPCVLL QRTTAKEQARRLIAAEMPASFIKRHAGVTIENHLNMMIPTVENPAVSPALLAAFLNSEAADRAFRCLSGSVAVSAYELEN LPLPTASDLKKLVGSKVTRASVEKACANLYATEGEA >Mature_596_residues MMTLDAAANVAPLLTEPLPSLAELPSPSYLRAVLRTQSKATAERSQLAFAEAITAHAVIAYWEQLGSGLAVQPPPNAARD LPEAGRRAASQFGQAIARLSVEDAASNLGLLYTALLPSEWRSERGVFYTPPALAERLLDQAEAAGLDWSRAHVLDPAAGA GAFLVPAARRLLKSIVDCSPAVAMHNLSARLRGFELDPFAAWMAQVFVEAAALPLIVACGRRPSAVVTVCDSLSITKING FDLVVGNPPFGRLKLAAERREYFSRSLYGHANLYGLFMDLAVRLAKPDGLVSFLTPSSFLAGEYFKNLRAVLHKEAPPVS LDFVTARKGVFDDVLQETVLATYRKGAKRARAVVSFIEAQPGVPVKAEPAGDFTLPRKATAPWFLPRHTDEAELAKRLRA MSARLADWGYKVSTGPLVWNRFKPQLCDHEEAGTVPLVWAESVTSDGRFVPRAEKRNHKPFLRLQPGNDWLVVRKPCVLL QRTTAKEQARRLIAAEMPASFIKRHAGVTIENHLNMMIPTVENPAVSPALLAAFLNSEAADRAFRCLSGSVAVSAYELEN LPLPTASDLKKLVGSKVTRASVEKACANLYATEGEA
Specific function: This methylase recognizes the double-stranded sequence CTGCAG, causes specific methylation on A-5 on both strand, and protects the DNA from cleavage by the BsuBI endonuclease [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR011639 [H]
Pfam domain/function: PF07669 Eco57I [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 64652; Mature: 64652
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTLDAAANVAPLLTEPLPSLAELPSPSYLRAVLRTQSKATAERSQLAFAEAITAHAVIA CCCCCCCCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWEQLGSGLAVQPPPNAARDLPEAGRRAASQFGQAIARLSVEDAASNLGLLYTALLPSEW HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH RSERGVFYTPPALAERLLDQAEAAGLDWSRAHVLDPAAGAGAFLVPAARRLLKSIVDCSP HCCCCEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCH AVAMHNLSARLRGFELDPFAAWMAQVFVEAAALPLIVACGRRPSAVVTVCDSLSITKING HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECC FDLVVGNPPFGRLKLAAERREYFSRSLYGHANLYGLFMDLAVRLAKPDGLVSFLTPSSFL EEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHH AGEYFKNLRAVLHKEAPPVSLDFVTARKGVFDDVLQETVLATYRKGAKRARAVVSFIEAQ HHHHHHHHHHHHHCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGVPVKAEPAGDFTLPRKATAPWFLPRHTDEAELAKRLRAMSARLADWGYKVSTGPLVWN CCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCEEEC RFKPQLCDHEEAGTVPLVWAESVTSDGRFVPRAEKRNHKPFLRLQPGNDWLVVRKPCVLL CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCEEEEECCHHHH QRTTAKEQARRLIAAEMPASFIKRHAGVTIENHLNMMIPTVENPAVSPALLAAFLNSEAA HHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCEEEECCCCCCCCHHHHHHHHCCHHH DRAFRCLSGSVAVSAYELENLPLPTASDLKKLVGSKVTRASVEKACANLYATEGEA HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MMTLDAAANVAPLLTEPLPSLAELPSPSYLRAVLRTQSKATAERSQLAFAEAITAHAVIA CCCCCCCCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWEQLGSGLAVQPPPNAARDLPEAGRRAASQFGQAIARLSVEDAASNLGLLYTALLPSEW HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH RSERGVFYTPPALAERLLDQAEAAGLDWSRAHVLDPAAGAGAFLVPAARRLLKSIVDCSP HCCCCEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCH AVAMHNLSARLRGFELDPFAAWMAQVFVEAAALPLIVACGRRPSAVVTVCDSLSITKING HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECC FDLVVGNPPFGRLKLAAERREYFSRSLYGHANLYGLFMDLAVRLAKPDGLVSFLTPSSFL EEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHH AGEYFKNLRAVLHKEAPPVSLDFVTARKGVFDDVLQETVLATYRKGAKRARAVVSFIEAQ HHHHHHHHHHHHHCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGVPVKAEPAGDFTLPRKATAPWFLPRHTDEAELAKRLRAMSARLADWGYKVSTGPLVWN CCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCEEEC RFKPQLCDHEEAGTVPLVWAESVTSDGRFVPRAEKRNHKPFLRLQPGNDWLVVRKPCVLL CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCEEEEECCHHHH QRTTAKEQARRLIAAEMPASFIKRHAGVTIENHLNMMIPTVENPAVSPALLAAFLNSEAA HHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCEEEECCCCCCCCHHHHHHHHCCHHH DRAFRCLSGSVAVSAYELENLPLPTASDLKKLVGSKVTRASVEKACANLYATEGEA HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1480472 [H]