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The map label for this gene is ycfJ [H]

Identifier: 84625376

GI number: 84625376

Start: 4204635

End: 4205015

Strand: Reverse

Name: ycfJ [H]

Synonym: XOO_3719

Alternate gene names: 84625376

Gene position: 4205015-4204635 (Counterclockwise)

Preceding gene: 84625377

Following gene: 84625375

Centisome position: 85.12

GC content: 62.47

Gene sequence:

>381_bases
ATGAAAATGCGCACCTCGCTGCTGGGTATGTCACTGATTGGCCTGATGGCAACGAGCACCTTCGCCCAGGCTCAAAGCTA
TTCGCATCAGCATCGCTATACGGAAGCAGACGAAGGCCGCAGGTTCAACGATGGAACCCGCGTTCGCTGCCGTAACGTCG
AAGTGCAGAAAAACGCGACTGACCCGAACCGCATCGGCGGTACGTTGGCCGGCGCTGCAATTGGTGGCTTGCTAGGTAAC
CAGGTCGGCGGCGGCAATGGCAAGAAGCTGGCGACGGTGGCGGGTGCAGTGGCGGGCGCCGCCGCCGGCCGCACCATCCA
GGGTAATCGCCAGCAGGCCAATGGCAATCGTCGGGTCGAGCGCGTCTGCGAACGTCGCTGA

Upstream 100 bases:

>100_bases
AGCCTGAATAGCCAGGTGCGCGCTTCACGTTGTGTTCTCGACTGTGTGGCCAGAGTGCGCCCATGACTCGCCGAGCGGGC
GAGAAACGTGGAGAACAACG

Downstream 100 bases:

>100_bases
GCCTGGCGAAGTGATTGGTCTGAACTGAGTTGCGAGCCCCGGCCATGCCGGGGCTTTCTACGTCTGAGGATGCGGCGCCG
TGCCGACGAGTGATTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKMRTSLLGMSLIGLMATSTFAQAQSYSHQHRYTEADEGRRFNDGTRVRCRNVEVQKNATDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGAAAGRTIQGNRQQANGNRRVERVCERR

Sequences:

>Translated_126_residues
MKMRTSLLGMSLIGLMATSTFAQAQSYSHQHRYTEADEGRRFNDGTRVRCRNVEVQKNATDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGAAAGRTIQGNRQQANGNRRVERVCERR
>Mature_126_residues
MKMRTSLLGMSLIGLMATSTFAQAQSYSHQHRYTEADEGRRFNDGTRVRCRNVEVQKNATDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGAAAGRTIQGNRQQANGNRRVERVCERR

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=80, Percent_Identity=43.75, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 13357; Mature: 13357

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMRTSLLGMSLIGLMATSTFAQAQSYSHQHRYTEADEGRRFNDGTRVRCRNVEVQKNAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECEEEECCCC
DPNRIGGTLAGAAIGGLLGNQVGGGNGKKLATVAGAVAGAAAGRTIQGNRQQANGNRRVE
CCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RVCERR
HHHCCC
>Mature Secondary Structure
MKMRTSLLGMSLIGLMATSTFAQAQSYSHQHRYTEADEGRRFNDGTRVRCRNVEVQKNAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECEEEECCCC
DPNRIGGTLAGAAIGGLLGNQVGGGNGKKLATVAGAVAGAAAGRTIQGNRQQANGNRRVE
CCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RVCERR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]