Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
---|---|
Accession | NC_007705 |
Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84625359
Identifier: 84625359
GI number: 84625359
Start: 4182201
End: 4183310
Strand: Reverse
Name: 84625359
Synonym: XOO_3702
Alternate gene names: NA
Gene position: 4183310-4182201 (Counterclockwise)
Preceding gene: 84625360
Following gene: 84625358
Centisome position: 84.68
GC content: 67.21
Gene sequence:
>1110_bases ATGACCGCCTCACTGTGTTCTCCATCGTCGCCTGTGCGTCTGTTCGCCGTGGTGCTGGGCGCGTTGCTCGCCACTCCCGT CACCGCGATGGCTGCACCGCCGGCGCAGGCGGTGGTGCAACGCCTGATCGGCGCGCGTGCCACCCAGTTCGAGATGCGTG TGGCGCCGCGTGGCGACGGTGCGGACTGGTACCGCATCGATGCCGGCGGCGACACGGTGCGCATTGCCGGCTCCTCGCAA GTGGCGTTGGCGCGTGGCGCCTATGCGTATCTCGGCCAGGCCGGTGCGGCCTCGATGAGTTGGGAAGGCGACCGCCTGGC ATTGCCGGCGCAATGGCCGGCCTACAGCAGTGGTCAGGTGCGCACGCCGTTTGCCCACCGCGCCTATCTCAACACCTGCA CCTACGGCTACACCACGCCGTTCTGGGATTGGCCGCGCTGGCAGCGCGAGATCGACTGGATGGCCTTGCACGGCATCGAC ATGCCGCTGGCGATGGAAGGCCAGGAAGCGATCTGGCAGGCGCTGTGGCGCGAGTTCGATGTCAGCGATGCCGCGTTGGC AGCGTATTTCTCCGGCCCGGCGTTCACACCGTGGCAGCGCATGGGCAATATCGAAGGCTATCGCGCGCCGCTGCCGCAAC AATGGATCGACAGCAAGCGCGTGCTGCAGAAGCAGATCCTGACGCGCATGCGCGAGTTGGGCATGCAGCCGGTGCTGCCG GCATTTGCCGGCTACGTGCCCAAGGCGTTCGCGCAGGCGCATCCGCATGCGCGCATCTACCGCATGCGCGCATCTACCGC ATGCGTGCCTGGGAAGGCTTTCACGAAACCTATTGGCTGGATCCGCGCGATCCGCTGTTTGCCAAGGTCGCGCGACGGTT CCTTGAGCTGTACACTCAGGCCTACGGCGCAGGCGAGTTCTACCTGGCCGATGCCTTCAACGAAATGCTGCCGCCGGTGG CCGACGACGGCAGCGACGTGGCCGCCGCCAAGTACGGCGACAGCATCGCCAACTTCGATGCCGCACGCGCCAAGGCGGTG CCGCCAGCGCAACGCGATGCCCGCCTGGCCGCCTACGGGCAGGCGTTGTACCGCTCCATCGCGCAGGTGA
Upstream 100 bases:
>100_bases CCGCAGCTGGCGAGCGCACGCTCGCGGTGATTCTGCAGGTCGCTGCCGATCAACCGTTTGGATTCCACGACGTCGTCACC GTGCATTATCGGAACTCGCC
Downstream 100 bases:
>100_bases ATCCGAAGGCCACCTGGGTGATGCAGGGCTGGCTGTTCGGTGCCGACTGCGCGTTCTGGCAACCGCAGGCGATCGCTGCG TTTCTCGGCAAGGTGCCCGA
Product: truncated N-acetylglucosaminidase
Products: NA
Alternate protein names: Alpha-N-Acetylglucosaminidase Family Protein; N-Acetylglucosaminidase; Truncated N-Acetylglucosaminidase; LOW QUALITY PROTEIN Alpha-N-Acetylglucosaminidase; Glycoside Hydrolase Family
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTASLCSPSSPVRLFAVVLGALLATPVTAMAAPPAQAVVQRLIGARATQFEMRVAPRGDGADWYRIDAGGDTVRIAGSSQ VALARGAYAYLGQAGAASMSWEGDRLALPAQWPAYSSGQVRTPFAHRAYLNTCTYGYTTPFWDWPRWQREIDWMALHGID MPLAMEGQEAIWQALWREFDVSDAALAAYFSGPAFTPWQRMGNIEGYRAPLPQQWIDSKRVLQKQILTRMRELGMQPVLP AFAGYVPKAFAQAHPHARIYRMRASTACVPGKAFTKPIGWIRAIRCLPRSRDGSLSCTLRPTAQASSTWPMPSTKCCRRW PTTAATWPPPSTATASPTSMPHAPRRCRQRNAMPAWPPTGRRCTAPSRR
Sequences:
>Translated_369_residues MTASLCSPSSPVRLFAVVLGALLATPVTAMAAPPAQAVVQRLIGARATQFEMRVAPRGDGADWYRIDAGGDTVRIAGSSQ VALARGAYAYLGQAGAASMSWEGDRLALPAQWPAYSSGQVRTPFAHRAYLNTCTYGYTTPFWDWPRWQREIDWMALHGID MPLAMEGQEAIWQALWREFDVSDAALAAYFSGPAFTPWQRMGNIEGYRAPLPQQWIDSKRVLQKQILTRMRELGMQPVLP AFAGYVPKAFAQAHPHARIYRMRASTACVPGKAFTKPIGWIRAIRCLPRSRDGSLSCTLRPTAQASSTWPMPSTKCCRRW PTTAATWPPPSTATASPTSMPHAPRRCRQRNAMPAWPPTGRRCTAPSRR >Mature_368_residues TASLCSPSSPVRLFAVVLGALLATPVTAMAAPPAQAVVQRLIGARATQFEMRVAPRGDGADWYRIDAGGDTVRIAGSSQV ALARGAYAYLGQAGAASMSWEGDRLALPAQWPAYSSGQVRTPFAHRAYLNTCTYGYTTPFWDWPRWQREIDWMALHGIDM PLAMEGQEAIWQALWREFDVSDAALAAYFSGPAFTPWQRMGNIEGYRAPLPQQWIDSKRVLQKQILTRMRELGMQPVLPA FAGYVPKAFAQAHPHARIYRMRASTACVPGKAFTKPIGWIRAIRCLPRSRDGSLSCTLRPTAQASSTWPMPSTKCCRRWP TTAATWPPPSTATASPTSMPHAPRRCRQRNAMPAWPPTGRRCTAPSRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI66346698, Length=205, Percent_Identity=43.4146341463415, Blast_Score=172, Evalue=3e-43, Organism=Caenorhabditis elegans, GI32564213, Length=136, Percent_Identity=37.5, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21356587, Length=228, Percent_Identity=33.7719298245614, Blast_Score=126, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40747; Mature: 40616
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASLCSPSSPVRLFAVVLGALLATPVTAMAAPPAQAVVQRLIGARATQFEMRVAPRGDG CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCC ADWYRIDAGGDTVRIAGSSQVALARGAYAYLGQAGAASMSWEGDRLALPAQWPAYSSGQV CCEEEEECCCCEEEEECCCCEEHHHCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCE RTPFAHRAYLNTCTYGYTTPFWDWPRWQREIDWMALHGIDMPLAMEGQEAIWQALWREFD ECCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEEEECCCCCEEECCHHHHHHHHHHHCC VSDAALAAYFSGPAFTPWQRMGNIEGYRAPLPQQWIDSKRVLQKQILTRMRELGMQPVLP CCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH AFAGYVPKAFAQAHPHARIYRMRASTACVPGKAFTKPIGWIRAIRCLPRSRDGSLSCTLR HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC PTAQASSTWPMPSTKCCRRWPTTAATWPPPSTATASPTSMPHAPRRCRQRNAMPAWPPTG CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC RRCTAPSRR CCCCCCCCC >Mature Secondary Structure TASLCSPSSPVRLFAVVLGALLATPVTAMAAPPAQAVVQRLIGARATQFEMRVAPRGDG CCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCC ADWYRIDAGGDTVRIAGSSQVALARGAYAYLGQAGAASMSWEGDRLALPAQWPAYSSGQV CCEEEEECCCCEEEEECCCCEEHHHCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCE RTPFAHRAYLNTCTYGYTTPFWDWPRWQREIDWMALHGIDMPLAMEGQEAIWQALWREFD ECCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEEEECCCCCEEECCHHHHHHHHHHHCC VSDAALAAYFSGPAFTPWQRMGNIEGYRAPLPQQWIDSKRVLQKQILTRMRELGMQPVLP CCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH AFAGYVPKAFAQAHPHARIYRMRASTACVPGKAFTKPIGWIRAIRCLPRSRDGSLSCTLR HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC PTAQASSTWPMPSTKCCRRWPTTAATWPPPSTATASPTSMPHAPRRCRQRNAMPAWPPTG CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC RRCTAPSRR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA