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The map label for this gene is yagA [C]

Identifier: 84625326

GI number: 84625326

Start: 4144033

End: 4144578

Strand: Reverse

Name: yagA [C]

Synonym: XOO_3669

Alternate gene names: 84625326

Gene position: 4144578-4144033 (Counterclockwise)

Preceding gene: 84625327

Following gene: 84625320

Centisome position: 83.89

GC content: 61.9

Gene sequence:

>546_bases
GTGCCGGTAGGCGAGCGTGCGCCGTTGCTGCGGCCCACCAAGGCCAACCAGGTGTGGTCGATGGACGTCGTGTTCGACCG
CACCGCCGAAGGCAGGGCAATCAAATGCCTGGTGATCGTGGACGACGCAACCCACGAAGCGGTCGCCATCGACGTGGAGC
GTGCGATCTCGGGACACGGCGTTGTGCGCGTGCTGGATCGGTTGGCACACAGTCGTGGCCTGCCGAAGATGATCCGCACG
GACAATGACAAGGAGTTCTGTGGCAAGGCCATGGTCGCCTGGGCGCATGCCAATCGTGTGCAGCTACGCCAGATCCAGCC
TGGCAAGCCGAACCAGAATGCCTATGTCGAATCCTTCAACGGCCGGCTACGCGACGAATGCCTCAACGAACACTGGTTCC
CAACGCTGCTGCATGCGCGCACCGAGATCGAACGCTGGCGCCGCGAATACAACGAACACCGCCCCAAAAAAACAATCGGC
GGAATGACGCCGGTGGCCTATGCCCAGCAGTTGGCCAATAGCGAGATCATCACCCCCGGACTCTAA

Upstream 100 bases:

>100_bases
CTCAAGCTGCGGCAGGAAGGGCGTCTCGTGAACTATAAGCGGGTGGAGCGGCTGTATTGCGAGCAGCAGCTGCAGGTCCG
CCGCCGCACGCGTAAATAAG

Downstream 100 bases:

>100_bases
ACCCGACTGCTACTCAGGATGGGGGGACGTCGCATCCACGGTGTAGCCGACGGCCCGTTGATGCGTTTGCCGATTAGTTG
ATACAACGCCGCGCGCAACG

Product: ISXoo3 transposase orfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPVGERAPLLRPTKANQVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRT
DNDKEFCGKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIG
GMTPVAYAQQLANSEIITPGL

Sequences:

>Translated_181_residues
MPVGERAPLLRPTKANQVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRT
DNDKEFCGKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIG
GMTPVAYAQQLANSEIITPGL
>Mature_180_residues
PVGERAPLLRPTKANQVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKMIRTD
NDKEFCGKAMVAWAHANRVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGG
MTPVAYAQQLANSEIITPGL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 20555; Mature: 20424

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVGERAPLLRPTKANQVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHG
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCH
VVRVLDRLAHSRGLPKMIRTDNDKEFCGKAMVAWAHANRVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGGMTPVAYAQQLANSEIITPG
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCC
L
C
>Mature Secondary Structure 
PVGERAPLLRPTKANQVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHG
CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCH
VVRVLDRLAHSRGLPKMIRTDNDKEFCGKAMVAWAHANRVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKTIGGMTPVAYAQQLANSEIITPG
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152895 [H]