| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is secA [H]
Identifier: 84625252
GI number: 84625252
Start: 4065876
End: 4068614
Strand: Reverse
Name: secA [H]
Synonym: XOO_3595
Alternate gene names: 84625252
Gene position: 4068614-4065876 (Counterclockwise)
Preceding gene: 84625253
Following gene: 84625251
Centisome position: 82.36
GC content: 62.58
Gene sequence:
>2739_bases ATGATCAACAGTCTGCTTACCCGTGTCTTTGGCAGTCGTAACGAACGCCAGCTGCGCCAGCTCACCCGCCTCGTCACCCA GATCAATGCGCTGGAGCCGACGATCGAGAAGCTCTCTGACGCCGAGCTGCAAGCCAAGACCCCGGAGTTCAAGCAGCGGC TTGCCGCCGGTGAGTCCCTGGACAAGATTCTTCCCGAAGCCTTTGCGGTGTGCCGCGAGGCCAGCCGCCGCGTGCTCGGC ATGCGCCATTACGATGTGCAGCTGATCGGCGGCATGGTGTTGCACCTGGGCAAGATCGCTGAGATGCGCACCGGCGAAGG CAAGACCCTGGTGGCCACGCTGCCGGTGTACCTCAACGCGCTGCAGGGCGAGGGCGTGCACGTGGTCACGGTCAACGACT ACCTGGCGCGCCGCGACGCCGCGCAGATGGGCAAGTTGTACAACTGGCTGGGCCTGAGCGTAGGCGTGGTGTATCCGGGC ATGCCGCACAGCGACAAGCGCGAGGCCTACGGCAGCGACATCACCTACGGCACCAATAACGAATTCGGCTTCGACTACCT GCGCGACAACATGGCGCTGTCGCGCGCCGACCGCTACCAGCGTACTCTGCATTACGCGATCGTCGACGAAGTGGACTCGA TCCTGATCGACGAAGCGCGCACCCCGCTGATCATCTCCGGCCCGGCCGACGAGTCGCCGGAGCTGTACATCCGCGTCAAC CGCATCGTGCCGCAGCTGACCAAGCAGGAAAGCGAAGAAGGCGAAGGCGATTTCTGGGTCGACGAGAAGGGCAAGCAGGT GCATCTGTCGGAGGCGGGCATGGGCCACGCCGAAGAACTGCTGCTGCAGGCCGGCATCCTGGAAAACGCCGAAGACGGCC TGTATGCCGCGCAGAACCTGAGCGTGGTGCATCACCTCAACGCGGCGCTGCGTGCGCATGCGATCTATCAGCGCGATGTG GATTACATCGTGCGCGATGGCGAAGTGGTGATCGTGGACGAATTCACCGGCCGTACGCTGTCCGGGCGGCGCTGGTCCGA CGGTCTGCATCAGGCGGTCGAAGCGAAGGAAGGCGTGCCGGTGCAGCGCGAAAACCAGACGCTGGCCAGCATCACCTTCC AGAACCTGTTCCGCATGTACAAGAAGCTGTCCGGCATGACCGGTACGGCCGACACCGAAGCCTACGAATTCCAGAGCATC TACGGCCTGGAAGTGGTGGTGATCCCGACCAACCGCCCGACCGTGCGCAAGGACCATCCGGACCAGGTGTTCCTCAACCG CAAGGGCAAGTTCAACGCGGTGCTGGCCGACATCGAAGACTGTGCCAAGCGCGGTCAGCCGGTGTTGGTGGGGACGACCT CGATCGAGACCTCGGAAATGCTGTCCGAGCATCTGCGCAAAGCCGGGGTGAAGCACGAAGTGCTCAACGCCAAGCAGCAC GAGCGCGAAGCCACCATCGTGGCCAACGCCGGCCAACCGGGCGCGGTAACCATCGCCACCAATATGGCCGGTCGCGGTAC CGACATCGTGCTGGGCGGTTCGTTGGAATCGGAGTATCACGCCCTCGGCGAAGACGCCACCGAAGACGCGCGCTTCAAGA TCAAGACCGACTGGCAGCGTCGTCATGACGCGGTCAAGGCGGCCGGCGGCCTGCACATCATCGGTACCGAACGCCACGAA TCGCGGCGTATCGACAACCAGCTGCGCGGCCGTGCCGGTCGTCAGGGCGACCCGGGTTCGTCGCGCTTCTATCTGTCGCT GGAAGACAATCTGATGCGCATCTTCGCCTCGGACTGGGTCCAGAAGGCGATGCGCATGATGGGCATGAAGGAAGACGACG TCATCGAAGATCGCCTGGTCAGCCGGCAGATCGAAAAGGCGCAGCGCAAGGTGGAAGCGCATAACTTCGACATCCGCAAG AACCTGCTGGATTTCGACGACGTCAACAACGATCAGCGCAAGGTGATCTACGCCCAGCGCGATGAATTGCTGGACGCCGA GTCGGTCAAGGACAACGTCGACGGGATTCGCGGCGATGTGATCTATGATCTGGTTGCACGCTTCGTGCCGCCCAATTCGG TGGACGAACAGTGGGACGTGAAGGGCCTGGAAGCTACGCTGGAGTCCGAGCTGGGCGTGACCTTGTCGCTGACCGACATG GTGCGCACGCAAGAAGAGATTGATGCCGAGCAGATTGCCGCCAAGGTGCAGGCAGCAGTGGATGCGCACTTCGCCGAGAA GGAAGCGGCCGTGGGCAACGACACCATGCGCGCGTTGGAAAAGCACGTGATGCTGACCGTGCTCGACCAGGGCTGGAAGG AGCACCTGGCCAAGATGGATTACCTGCGCCAGGGCATCTATCTGCGCGGTTACGCACAGAAGCAGCCCAAGCAGGAATAT AAAAAAGAAGCGTTCGAGCTGTTCTCCGAGATGCTGGAGAACGTCAAGCGTGAAGTGATCCATCTGCTGGCGCGTGTGCG CATCCGCAGCGAAGAAGAAGTGGCCGAACTGGAAGAGCAGGAACGTCTCCATGCGCAGGCGCGCTTGATGGCCTCGCAAT TCCAGCACCAGGATGTGGGTGGCTACGGCACTGACGAGGAAGCCGCGCAGGTGCAGAGCGGCAACGCGCCGGTCCCGGTC TCGCAGGTCACCCGCGACGAGCCAAAGGTCGGCCGCAACGATCCTTGCCCCTGCGGCAGCGGCAAGAAGTACAAGCACTG CCACGGTCAACTCAGCTGA
Upstream 100 bases:
>100_bases TTGCCATCGACAGGGCGCAGTGCGCCCTGTTTCGTTTACGGCGGTCGGGTCTGTGGGGACCGGCGTCGGTCAAACCGTTC CTTTTCAACCGGTTTCTTCA
Downstream 100 bases:
>100_bases GCTGAGTTGACCGTGGAGCAGCCCGCTTTGCGGGCTGCTCACCCAGCGTCCGCGTTGCGGACGTTGGGTGCACGGTACTC TTCCGATCCCCGCGCCGTTG
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 912; Mature: 912
Protein sequence:
>912_residues MINSLLTRVFGSRNERQLRQLTRLVTQINALEPTIEKLSDAELQAKTPEFKQRLAAGESLDKILPEAFAVCREASRRVLG MRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALQGEGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPG MPHSDKREAYGSDITYGTNNEFGFDYLRDNMALSRADRYQRTLHYAIVDEVDSILIDEARTPLIISGPADESPELYIRVN RIVPQLTKQESEEGEGDFWVDEKGKQVHLSEAGMGHAEELLLQAGILENAEDGLYAAQNLSVVHHLNAALRAHAIYQRDV DYIVRDGEVVIVDEFTGRTLSGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYKKLSGMTGTADTEAYEFQSI YGLEVVVIPTNRPTVRKDHPDQVFLNRKGKFNAVLADIEDCAKRGQPVLVGTTSIETSEMLSEHLRKAGVKHEVLNAKQH EREATIVANAGQPGAVTIATNMAGRGTDIVLGGSLESEYHALGEDATEDARFKIKTDWQRRHDAVKAAGGLHIIGTERHE SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDWVQKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRK NLLDFDDVNNDQRKVIYAQRDELLDAESVKDNVDGIRGDVIYDLVARFVPPNSVDEQWDVKGLEATLESELGVTLSLTDM VRTQEEIDAEQIAAKVQAAVDAHFAEKEAAVGNDTMRALEKHVMLTVLDQGWKEHLAKMDYLRQGIYLRGYAQKQPKQEY KKEAFELFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPV SQVTRDEPKVGRNDPCPCGSGKKYKHCHGQLS
Sequences:
>Translated_912_residues MINSLLTRVFGSRNERQLRQLTRLVTQINALEPTIEKLSDAELQAKTPEFKQRLAAGESLDKILPEAFAVCREASRRVLG MRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALQGEGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPG MPHSDKREAYGSDITYGTNNEFGFDYLRDNMALSRADRYQRTLHYAIVDEVDSILIDEARTPLIISGPADESPELYIRVN RIVPQLTKQESEEGEGDFWVDEKGKQVHLSEAGMGHAEELLLQAGILENAEDGLYAAQNLSVVHHLNAALRAHAIYQRDV DYIVRDGEVVIVDEFTGRTLSGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYKKLSGMTGTADTEAYEFQSI YGLEVVVIPTNRPTVRKDHPDQVFLNRKGKFNAVLADIEDCAKRGQPVLVGTTSIETSEMLSEHLRKAGVKHEVLNAKQH EREATIVANAGQPGAVTIATNMAGRGTDIVLGGSLESEYHALGEDATEDARFKIKTDWQRRHDAVKAAGGLHIIGTERHE SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDWVQKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRK NLLDFDDVNNDQRKVIYAQRDELLDAESVKDNVDGIRGDVIYDLVARFVPPNSVDEQWDVKGLEATLESELGVTLSLTDM VRTQEEIDAEQIAAKVQAAVDAHFAEKEAAVGNDTMRALEKHVMLTVLDQGWKEHLAKMDYLRQGIYLRGYAQKQPKQEY KKEAFELFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPV SQVTRDEPKVGRNDPCPCGSGKKYKHCHGQLS >Mature_912_residues MINSLLTRVFGSRNERQLRQLTRLVTQINALEPTIEKLSDAELQAKTPEFKQRLAAGESLDKILPEAFAVCREASRRVLG MRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALQGEGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPG MPHSDKREAYGSDITYGTNNEFGFDYLRDNMALSRADRYQRTLHYAIVDEVDSILIDEARTPLIISGPADESPELYIRVN RIVPQLTKQESEEGEGDFWVDEKGKQVHLSEAGMGHAEELLLQAGILENAEDGLYAAQNLSVVHHLNAALRAHAIYQRDV DYIVRDGEVVIVDEFTGRTLSGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYKKLSGMTGTADTEAYEFQSI YGLEVVVIPTNRPTVRKDHPDQVFLNRKGKFNAVLADIEDCAKRGQPVLVGTTSIETSEMLSEHLRKAGVKHEVLNAKQH EREATIVANAGQPGAVTIATNMAGRGTDIVLGGSLESEYHALGEDATEDARFKIKTDWQRRHDAVKAAGGLHIIGTERHE SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDWVQKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRK NLLDFDDVNNDQRKVIYAQRDELLDAESVKDNVDGIRGDVIYDLVARFVPPNSVDEQWDVKGLEATLESELGVTLSLTDM VRTQEEIDAEQIAAKVQAAVDAHFAEKEAAVGNDTMRALEKHVMLTVLDQGWKEHLAKMDYLRQGIYLRGYAQKQPKQEY KKEAFELFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPV SQVTRDEPKVGRNDPCPCGSGKKYKHCHGQLS
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=916, Percent_Identity=60.9170305676856, Blast_Score=1124, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 102383; Mature: 102383
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINSLLTRVFGSRNERQLRQLTRLVTQINALEPTIEKLSDAELQAKTPEFKQRLAAGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHHHHHCCCHH DKILPEAFAVCREASRRVLGMRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH LQGEGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPGMPHSDKREAYGSDITYGTNN HCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCCCCCCCCCC EFGFDYLRDNMALSRADRYQRTLHYAIVDEVDSILIDEARTPLIISGPADESPELYIRVN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEH RIVPQLTKQESEEGEGDFWVDEKGKQVHLSEAGMGHAEELLLQAGILENAEDGLYAAQNL HHHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH SVVHHLNAALRAHAIYQRDVDYIVRDGEVVIVDEFTGRTLSGRRWSDGLHQAVEAKEGVP HHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC VQRENQTLASITFQNLFRMYKKLSGMTGTADTEAYEFQSIYGLEVVVIPTNRPTVRKDHP CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCC DQVFLNRKGKFNAVLADIEDCAKRGQPVLVGTTSIETSEMLSEHLRKAGVKHEVLNAKQH CEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCHHH EREATIVANAGQPGAVTIATNMAGRGTDIVLGGSLESEYHALGEDATEDARFKIKTDWQR CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCCCHHHHHCCCCCCCCCEEEEECCHHH RHDAVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDWV HHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH QKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRKNLLDFDDVNNDQRKVIYAQR HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEHH DELLDAESVKDNVDGIRGDVIYDLVARFVPPNSVDEQWDVKGLEATLESELGVTLSLTDM HHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHH VRTQEEIDAEQIAAKVQAAVDAHFAEKEAAVGNDTMRALEKHVMLTVLDQGWKEHLAKMD HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLRQGIYLRGYAQKQPKQEYKKEAFELFSEMLENVKREVIHLLARVRIRSEEEVAELEEQ HHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPVSQVTRDEPKVGRNDPCPCGS HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GKKYKHCHGQLS CCCCCCCCCCCC >Mature Secondary Structure MINSLLTRVFGSRNERQLRQLTRLVTQINALEPTIEKLSDAELQAKTPEFKQRLAAGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHHHHHCCCHH DKILPEAFAVCREASRRVLGMRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH LQGEGVHVVTVNDYLARRDAAQMGKLYNWLGLSVGVVYPGMPHSDKREAYGSDITYGTNN HCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCCCCCCCCCC EFGFDYLRDNMALSRADRYQRTLHYAIVDEVDSILIDEARTPLIISGPADESPELYIRVN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEH RIVPQLTKQESEEGEGDFWVDEKGKQVHLSEAGMGHAEELLLQAGILENAEDGLYAAQNL HHHHHHHHHCCCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH SVVHHLNAALRAHAIYQRDVDYIVRDGEVVIVDEFTGRTLSGRRWSDGLHQAVEAKEGVP HHHHHHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC VQRENQTLASITFQNLFRMYKKLSGMTGTADTEAYEFQSIYGLEVVVIPTNRPTVRKDHP CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCC DQVFLNRKGKFNAVLADIEDCAKRGQPVLVGTTSIETSEMLSEHLRKAGVKHEVLNAKQH CEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCHHH EREATIVANAGQPGAVTIATNMAGRGTDIVLGGSLESEYHALGEDATEDARFKIKTDWQR CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCCCHHHHHCCCCCCCCCEEEEECCHHH RHDAVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASDWV HHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH QKAMRMMGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRKNLLDFDDVNNDQRKVIYAQR HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEHH DELLDAESVKDNVDGIRGDVIYDLVARFVPPNSVDEQWDVKGLEATLESELGVTLSLTDM HHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHH VRTQEEIDAEQIAAKVQAAVDAHFAEKEAAVGNDTMRALEKHVMLTVLDQGWKEHLAKMD HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLRQGIYLRGYAQKQPKQEYKKEAFELFSEMLENVKREVIHLLARVRIRSEEEVAELEEQ HHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPVSQVTRDEPKVGRNDPCPCGS HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GKKYKHCHGQLS CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]