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The map label for this gene is kdkA [H]

Identifier: 84622614

GI number: 84622614

Start: 1048688

End: 1049437

Strand: Direct

Name: kdkA [H]

Synonym: XOO_0957

Alternate gene names: 84622614

Gene position: 1048688-1049437 (Clockwise)

Preceding gene: 84622612

Following gene: 84622615

Centisome position: 21.23

GC content: 65.6

Gene sequence:

>750_bases
ATGGTTTCTTTCGATGCCACCGAAGCGTTGGCGCCGTACCGCGAAGGTCGCGGGTATGGCGCCATTGTGTTCGACCGCGA
ACGGCTGCGGCAAGCCGATGCCAGTCTGTTTTCGCCGCAATCGTGGGGCGACAGGGCGCGGCCGGTGGATAAAGGCGGGC
GTGGCGGCGCGTGGTTCGTAGATGCGCCGTTCGGCCGCAGCGTGTTACGGCAGTATCTGCGTGGCGGCATGGCCGCACGT
GTGAGCCGCGATCGCTATCTATGGAAAGGGGCAGGGCGCACGCGCAGTTTTGCCGAATTCCGGCTAATGCGCGAACTGAT
CAAACGCAAGTTACCGGTGCCGCGTCCGCTGGCCGCCTGCTATCTGCGCGAAGGTCTGGGCTATCGCGCTGCGCTGTTGA
TGGAGCGGCTGGAAAACGTGCGCTCCTTGGCCGATCACGCCCAGTTGGCCGGCCGCGGCGCGCCATGGGAGGCGACCGGG
CAATTGATCGCGCGCTTCCATCGTGCCGGCCTGGATCACCCCGACCTCAACGCGCACAACATCCTGTTCGATGCCGGCGG
GCATGGCTGGTTGATCGATTTCGACCGCGGCGTGCTGCGCATTCCGGCCACGCGCTGGCGTGAGCGTAATCTCAAGCGCC
TGCATCGCTCGCTGTTGAAGCTGCGCGGCAACCGCAGCGGCGAGGACGTCGATAAAGACTATGAGCGCCTGCACCGCGCC
TACGAACTGGCCTGGGGCCGGGGCTACTGA

Upstream 100 bases:

>100_bases
CGCACCAGCGGCACCACATGCGTGACATCGCCCAGGGCGGACAAGCGAAGCAAACACAGCGATGCGGGCGTTACAGCCAT
GGTGTTGTTAGACTCGATAG

Downstream 100 bases:

>100_bases
TGGACTGGGCCTTGCGGGTGCAGGGAGTTGGCAATGCGTCGGCGGTGGCGCTTGGCTCGCCGATGGCCACGCTCGAACGC
GCCGGCGTCCCATGGCTGAC

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MVSFDATEALAPYREGRGYGAIVFDRERLRQADASLFSPQSWGDRARPVDKGGRGGAWFVDAPFGRSVLRQYLRGGMAAR
VSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYRAALLMERLENVRSLADHAQLAGRGAPWEATG
QLIARFHRAGLDHPDLNAHNILFDAGGHGWLIDFDRGVLRIPATRWRERNLKRLHRSLLKLRGNRSGEDVDKDYERLHRA
YELAWGRGY

Sequences:

>Translated_249_residues
MVSFDATEALAPYREGRGYGAIVFDRERLRQADASLFSPQSWGDRARPVDKGGRGGAWFVDAPFGRSVLRQYLRGGMAAR
VSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYRAALLMERLENVRSLADHAQLAGRGAPWEATG
QLIARFHRAGLDHPDLNAHNILFDAGGHGWLIDFDRGVLRIPATRWRERNLKRLHRSLLKLRGNRSGEDVDKDYERLHRA
YELAWGRGY
>Mature_249_residues
MVSFDATEALAPYREGRGYGAIVFDRERLRQADASLFSPQSWGDRARPVDKGGRGGAWFVDAPFGRSVLRQYLRGGMAAR
VSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYRAALLMERLENVRSLADHAQLAGRGAPWEATG
QLIARFHRAGLDHPDLNAHNILFDAGGHGWLIDFDRGVLRIPATRWRERNLKRLHRSLLKLRGNRSGEDVDKDYERLHRA
YELAWGRGY

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28483; Mature: 28483

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSFDATEALAPYREGRGYGAIVFDRERLRQADASLFSPQSWGDRARPVDKGGRGGAWFV
CCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
DAPFGRSVLRQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAAC
ECCCCHHHHHHHHHCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
YLREGLGYRAALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCE
ILFDAGGHGWLIDFDRGVLRIPATRWRERNLKRLHRSLLKLRGNRSGEDVDKDYERLHRA
EEEECCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YELAWGRGY
HHHHCCCCC
>Mature Secondary Structure
MVSFDATEALAPYREGRGYGAIVFDRERLRQADASLFSPQSWGDRARPVDKGGRGGAWFV
CCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
DAPFGRSVLRQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAAC
ECCCCHHHHHHHHHCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
YLREGLGYRAALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCE
ILFDAGGHGWLIDFDRGVLRIPATRWRERNLKRLHRSLLKLRGNRSGEDVDKDYERLHRA
EEEECCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YELAWGRGY
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]