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The map label for this gene is yncD [C]

Identifier: 84622481

GI number: 84622481

Start: 894472

End: 896688

Strand: Direct

Name: yncD [C]

Synonym: XOO_0824

Alternate gene names: 84622481

Gene position: 894472-896688 (Clockwise)

Preceding gene: 84622479

Following gene: 84622482

Centisome position: 18.11

GC content: 63.64

Gene sequence:

>2217_bases
ATGTCCGCCAGCCGGTCGCTCAAGATCAGCGCGCTCGCCGTTGCCGTCGTTTCCCTTCTTCCGCTTGCCGCTGCCGCCCA
GCAGGCGCCCAGCGACGACGGTGTCGTGCGTCTGGATGCGGTCAAGGTCACGGTCGAGCGTCGTTCGGAAGACTCCAAGG
ACGTGCCGGTCTCCGCATCGGTGCTGCGCCCGGAATTCCTGGATGCCATCTCCACCAGCGGCTCGGACATCCGTGTGCTG
GCCGGCAAGGCGCCCAGCCTCAATATCGAATCGTCCAACGGCCGTGTGTTCCCGCGCGTGTACATCCGCGGCTACGGCAA
TACCGACTTCAATACCTATGCCTCGCAGCCGGTGTCGTTGATCTATGACGACGTGGTGCAGGAAAACGTGTTCTTGAAGG
GCTTCCCGATCTTCGATCTGGAAGGTCTGGAAGTGCTGCGCGGTCCGCAGGGCACGCTGTTCGGCCGCAATACGCCGGCC
GGCGTGGTGAAGTTCAACTCGGTCAAGCCAACCATCGGCGCCAATGACGGCTACGCCAGCCTGTCGTACGGCACCTACGG
CACCATGACCCTGGAAAGCGGCCTGAGCATCGCCATGGGCGACCATTGGGCAGCGCGTCTGTCCACCCTGGGTCAGCGCC
GCGACGATTGGGTGGAAAACCGCGACGGCCGCGATCTGGAAGGCTATACGGATTCGGCCGTGCGTCTGCAGTTGCTGTAC
CAGGCCAGCGACGATTTCAGCGCGTTGTTCAACGCGCATGCGCGCCATCTGGACGGCACCGCGCGCCTGTTTCGCGCCAA
CATCATCCAGCCGGGTACCAACCAGCTGGTCGAGGGTTTCGATCCGGAAAACTCCTTTATCGACGGTGCCAACCGCCAGG
AACTGCAAACCTACGGCGGCAGCGCCAACCTGACCTGGGATCTGGGCGATATCGCGCTGCACTCGATCACCGCCTACGAA
GGCATCGGCAAGTACTACAGCCGCGGCGACATCGACGGCGGCTTCGGCGCAGTGTTCGCACCGCCGTCGGGCCCGGGCGT
GATTCCGTTCCCGGTGGAAACCGCCGGTGGCATCAAGAGCCTGGACCAGTACAGCCAGGAAGTGCGTGCGCAATCGCAGT
ACGAAGGCCCGCTCAACTGGCAGGCCGGTCTGTACTACTTCCATGACGATGTGGAAGGCGAGAACTACACCTATAACACC
CTCAGCGGTGGCGATCTGGCCAGCTATCAGCTGACCCGCCAGCGCAATACTTCGTGGGCGGCGTTCGGGTCGTTGAACTA
CGCGGCCACCGATCGTTTGAACCTGCGCGCCGGCATCCGCTACACCTACGACAAGAAGACCTTCGACGCGCTGGCGCTGG
ACCGGGTCACCCTGGTCGAACCGTCCAGCGGCGAGACCGACAACTCCAAGGTCACCGGCGATCTGGCGGCAACGTTCTCC
ATCAACGACGACGTCAATGTGTACGCACGTGCGGCACGCGGCTTCCGTGGTGCCAGCTTCGGCGTGCCGTCGGGCACCGC
GCCGCTGACCGTGGCCGAGCCGGAAACGGTGGATTCGTTGGAGGTCGGCATCAAGTCGGACCTGTTCGACAACCGCGCGC
GCCTGAGCGTCGACGTCTACGATTTCCGGGTGAAGAACCAGCAGCTCACCGCAGTCGGTGGCGCGTCCAACGACGTGCGT
CTGCTCAACGCCGACAAGACCAAGGCGCGCGGCGCCGAGTTCGATTTCGAAGCCTTGCTCACCCAGAACCTGCGCGTCAC
CGCCGGTGGCGCCTATAACTGGACCCGCATCGACGACCCGAACCTGTCGGTGGGCATCTGCCGCACCTGCACCGTGACCG
ACCCGATCAACGCGGCCGGCCGCGCGGTGATCGACGGCAATGACCTGCCGCAGGCCGCCAAATGGATGGCCAATGCCACC
CTGCGTTACGGCATCCCGATGGGCAACGACGGCGAGCTGTTCTTCTACACCGACTGGTCGTACCGCAGTGAAGTGAACTT
CTTCCTGTACGATTCCAAGGAATTCACCGGCCAGCCGCTGGTCGAAGGTGGCGCCAAGATCGGTTACAACTGGGGCGCGG
GTGCGTACGAGTTGTCGGTGTTCTGCCGCAACTGCACCAATCAGATCCGCGTGACCGGTGCGATCGACTTCAACAACCTC
ACCGGCTTCATCAACGACCCGCGCATCGTGGGTGCGCAGTTGCGCGCCAACTTCTGA

Upstream 100 bases:

>100_bases
GTCTTACGGGCTTTGCCATATTTGTGTAAATCGTGTTAATTCTGCCGCACTGCGGCACGCAGGCCGGGCCGCCCCGCCAC
CAGAATCCGGAGTTCTCCCC

Downstream 100 bases:

>100_bases
TCGGCGCCGTGGTGTAGCAACATCCAACCGCCGGCGATCATGCCGGCGGTTTTTTTTTATGGCAGCAGGAGTGGGCAGAT
GCAGCGGACCTGGCAACGCG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor-Like Protein; Nb-Dependent Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor; NB Dependent Receptor Protein; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Siderophore Receptor; Transporter OMR Family; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MSASRSLKISALAVAVVSLLPLAAAAQQAPSDDGVVRLDAVKVTVERRSEDSKDVPVSASVLRPEFLDAISTSGSDIRVL
AGKAPSLNIESSNGRVFPRVYIRGYGNTDFNTYASQPVSLIYDDVVQENVFLKGFPIFDLEGLEVLRGPQGTLFGRNTPA
GVVKFNSVKPTIGANDGYASLSYGTYGTMTLESGLSIAMGDHWAARLSTLGQRRDDWVENRDGRDLEGYTDSAVRLQLLY
QASDDFSALFNAHARHLDGTARLFRANIIQPGTNQLVEGFDPENSFIDGANRQELQTYGGSANLTWDLGDIALHSITAYE
GIGKYYSRGDIDGGFGAVFAPPSGPGVIPFPVETAGGIKSLDQYSQEVRAQSQYEGPLNWQAGLYYFHDDVEGENYTYNT
LSGGDLASYQLTRQRNTSWAAFGSLNYAATDRLNLRAGIRYTYDKKTFDALALDRVTLVEPSSGETDNSKVTGDLAATFS
INDDVNVYARAARGFRGASFGVPSGTAPLTVAEPETVDSLEVGIKSDLFDNRARLSVDVYDFRVKNQQLTAVGGASNDVR
LLNADKTKARGAEFDFEALLTQNLRVTAGGAYNWTRIDDPNLSVGICRTCTVTDPINAAGRAVIDGNDLPQAAKWMANAT
LRYGIPMGNDGELFFYTDWSYRSEVNFFLYDSKEFTGQPLVEGGAKIGYNWGAGAYELSVFCRNCTNQIRVTGAIDFNNL
TGFINDPRIVGAQLRANF

Sequences:

>Translated_738_residues
MSASRSLKISALAVAVVSLLPLAAAAQQAPSDDGVVRLDAVKVTVERRSEDSKDVPVSASVLRPEFLDAISTSGSDIRVL
AGKAPSLNIESSNGRVFPRVYIRGYGNTDFNTYASQPVSLIYDDVVQENVFLKGFPIFDLEGLEVLRGPQGTLFGRNTPA
GVVKFNSVKPTIGANDGYASLSYGTYGTMTLESGLSIAMGDHWAARLSTLGQRRDDWVENRDGRDLEGYTDSAVRLQLLY
QASDDFSALFNAHARHLDGTARLFRANIIQPGTNQLVEGFDPENSFIDGANRQELQTYGGSANLTWDLGDIALHSITAYE
GIGKYYSRGDIDGGFGAVFAPPSGPGVIPFPVETAGGIKSLDQYSQEVRAQSQYEGPLNWQAGLYYFHDDVEGENYTYNT
LSGGDLASYQLTRQRNTSWAAFGSLNYAATDRLNLRAGIRYTYDKKTFDALALDRVTLVEPSSGETDNSKVTGDLAATFS
INDDVNVYARAARGFRGASFGVPSGTAPLTVAEPETVDSLEVGIKSDLFDNRARLSVDVYDFRVKNQQLTAVGGASNDVR
LLNADKTKARGAEFDFEALLTQNLRVTAGGAYNWTRIDDPNLSVGICRTCTVTDPINAAGRAVIDGNDLPQAAKWMANAT
LRYGIPMGNDGELFFYTDWSYRSEVNFFLYDSKEFTGQPLVEGGAKIGYNWGAGAYELSVFCRNCTNQIRVTGAIDFNNL
TGFINDPRIVGAQLRANF
>Mature_737_residues
SASRSLKISALAVAVVSLLPLAAAAQQAPSDDGVVRLDAVKVTVERRSEDSKDVPVSASVLRPEFLDAISTSGSDIRVLA
GKAPSLNIESSNGRVFPRVYIRGYGNTDFNTYASQPVSLIYDDVVQENVFLKGFPIFDLEGLEVLRGPQGTLFGRNTPAG
VVKFNSVKPTIGANDGYASLSYGTYGTMTLESGLSIAMGDHWAARLSTLGQRRDDWVENRDGRDLEGYTDSAVRLQLLYQ
ASDDFSALFNAHARHLDGTARLFRANIIQPGTNQLVEGFDPENSFIDGANRQELQTYGGSANLTWDLGDIALHSITAYEG
IGKYYSRGDIDGGFGAVFAPPSGPGVIPFPVETAGGIKSLDQYSQEVRAQSQYEGPLNWQAGLYYFHDDVEGENYTYNTL
SGGDLASYQLTRQRNTSWAAFGSLNYAATDRLNLRAGIRYTYDKKTFDALALDRVTLVEPSSGETDNSKVTGDLAATFSI
NDDVNVYARAARGFRGASFGVPSGTAPLTVAEPETVDSLEVGIKSDLFDNRARLSVDVYDFRVKNQQLTAVGGASNDVRL
LNADKTKARGAEFDFEALLTQNLRVTAGGAYNWTRIDDPNLSVGICRTCTVTDPINAAGRAVIDGNDLPQAAKWMANATL
RYGIPMGNDGELFFYTDWSYRSEVNFFLYDSKEFTGQPLVEGGAKIGYNWGAGAYELSVFCRNCTNQIRVTGAIDFNNLT
GFINDPRIVGAQLRANF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80124; Mature: 79992

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASRSLKISALAVAVVSLLPLAAAAQQAPSDDGVVRLDAVKVTVERRSEDSKDVPVSAS
CCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHH
VLRPEFLDAISTSGSDIRVLAGKAPSLNIESSNGRVFPRVYIRGYGNTDFNTYASQPVSL
HCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHH
IYDDVVQENVFLKGFPIFDLEGLEVLRGPQGTLFGRNTPAGVVKFNSVKPTIGANDGYAS
HHHHHHHCCEEEECCCEECCCCHHHHCCCCCCEECCCCCCCEEEECCCCCCCCCCCCEEE
LSYGTYGTMTLESGLSIAMGDHWAARLSTLGQRRDDWVENRDGRDLEGYTDSAVRLQLLY
EECCCEEEEEECCCCEEEECCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEEE
QASDDFSALFNAHARHLDGTARLFRANIIQPGTNQLVEGFDPENSFIDGANRQELQTYGG
ECCCCHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHCCCCCCCCEECCCCHHHHHHCCC
SANLTWDLGDIALHSITAYEGIGKYYSRGDIDGGFGAVFAPPSGPGVIPFPVETAGGIKS
CCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCCHHH
LDQYSQEVRAQSQYEGPLNWQAGLYYFHDDVEGENYTYNTLSGGDLASYQLTRQRNTSWA
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCEE
AFGSLNYAATDRLNLRAGIRYTYDKKTFDALALDRVTLVEPSSGETDNSKVTGDLAATFS
EECCCCEEECCCEEEEECCEEEECCCCHHHHEECEEEEECCCCCCCCCCEEEEEEEEEEE
INDDVNVYARAARGFRGASFGVPSGTAPLTVAEPETVDSLEVGIKSDLFDNRARLSVDVY
ECCCCEEHEEHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCHHHCCCCCCEEEEEEE
DFRVKNQQLTAVGGASNDVRLLNADKTKARGAEFDFEALLTQNLRVTAGGAYNWTRIDDP
EEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCEECCC
NLSVGICRTCTVTDPINAAGRAVIDGNDLPQAAKWMANATLRYGIPMGNDGELFFYTDWS
CCEEEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHCCEEEECCCCCCCCCEEEEECCC
YRSEVNFFLYDSKEFTGQPLVEGGAKIGYNWGAGAYELSVFCRNCTNQIRVTGAIDFNNL
CCCCEEEEEEECCCCCCCCHHCCCCEECCCCCCCEEEEHHHHHCCCCEEEEEEEEEECCC
TGFINDPRIVGAQLRANF
EECCCCCEEEEEEEECCC
>Mature Secondary Structure 
SASRSLKISALAVAVVSLLPLAAAAQQAPSDDGVVRLDAVKVTVERRSEDSKDVPVSAS
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHH
VLRPEFLDAISTSGSDIRVLAGKAPSLNIESSNGRVFPRVYIRGYGNTDFNTYASQPVSL
HCCHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHH
IYDDVVQENVFLKGFPIFDLEGLEVLRGPQGTLFGRNTPAGVVKFNSVKPTIGANDGYAS
HHHHHHHCCEEEECCCEECCCCHHHHCCCCCCEECCCCCCCEEEECCCCCCCCCCCCEEE
LSYGTYGTMTLESGLSIAMGDHWAARLSTLGQRRDDWVENRDGRDLEGYTDSAVRLQLLY
EECCCEEEEEECCCCEEEECCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEEE
QASDDFSALFNAHARHLDGTARLFRANIIQPGTNQLVEGFDPENSFIDGANRQELQTYGG
ECCCCHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHCCCCCCCCEECCCCHHHHHHCCC
SANLTWDLGDIALHSITAYEGIGKYYSRGDIDGGFGAVFAPPSGPGVIPFPVETAGGIKS
CCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCCHHH
LDQYSQEVRAQSQYEGPLNWQAGLYYFHDDVEGENYTYNTLSGGDLASYQLTRQRNTSWA
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCEE
AFGSLNYAATDRLNLRAGIRYTYDKKTFDALALDRVTLVEPSSGETDNSKVTGDLAATFS
EECCCCEEECCCEEEEECCEEEECCCCHHHHEECEEEEECCCCCCCCCCEEEEEEEEEEE
INDDVNVYARAARGFRGASFGVPSGTAPLTVAEPETVDSLEVGIKSDLFDNRARLSVDVY
ECCCCEEHEEHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCHHHCCCCCCEEEEEEE
DFRVKNQQLTAVGGASNDVRLLNADKTKARGAEFDFEALLTQNLRVTAGGAYNWTRIDDP
EEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCEECCC
NLSVGICRTCTVTDPINAAGRAVIDGNDLPQAAKWMANATLRYGIPMGNDGELFFYTDWS
CCEEEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHCCEEEECCCCCCCCCEEEEECCC
YRSEVNFFLYDSKEFTGQPLVEGGAKIGYNWGAGAYELSVFCRNCTNQIRVTGAIDFNNL
CCCCEEEEEEECCCCCCCCHHCCCCEECCCCCCCEEEEHHHHHCCCCEEEEEEEEEECCC
TGFINDPRIVGAQLRANF
EECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA