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The map label for this gene is xpsD [H]

Identifier: 84622438

GI number: 84622438

Start: 846433

End: 848745

Strand: Direct

Name: xpsD [H]

Synonym: XOO_0781

Alternate gene names: 84622438

Gene position: 846433-848745 (Clockwise)

Preceding gene: 84622437

Following gene: 84622439

Centisome position: 17.13

GC content: 62.26

Gene sequence:

>2313_bases
ATGAGTGAACGCATGACGCCGCGCCTGTTTCCCGTATCCCTGCTGATTGGCCTGCTGGCCGGTTGCGCCACCACTCCGCC
GCCGGACGTGCGCCGCGACGCGCGCTTGGATCCGAACGTCGGCGCTGCCGGCGCCACTCAAACCACCGCCGAGCAGAGTG
CCGACGGTAAGGCCAGCGCCAAGCCCAGCCCAGTGATCCGGCGCGGCAGCGGCACCATGATCAACCAGAGCGCCGCGTCC
GCGCCGGCGCCCACGCTGGGCATGGCCAGCAGCGGCAGCGCTACCTTCAATTTCGAAGGCGAATCGGTGCAGGCCGTGGT
CAAGGCCATCCTGGGCGACATGCTTGGTCAGAACTACGTCATCGCGCCCGGCGTGCAGGGCACCGTGACCCTGGCCACGC
CCAATCCGGTCTCGCCCGCGCAGGCGCTGAACCTGCTGGAGATGGTGCTGGGCTGGAACAATGCCCGCATGGTGTTCAGC
GGTGGCCGCTACAACATCGTGCCGGCCGACCAGGCATTGGCCGGCACCGTCGCGCCCAGCACCGCCTCGCCCTCGGCCGC
GCGCGGTTTCGAGGTACGCGTGGTGCCGCTGAAATACATCTCGGCCAGCGAAATGAAGAAGGTGCTCGAGCCCTATGCGC
GCCCGAATGCCATCGTCGGTACCGACCCGGCGCGCAACGTGATCACCCTGGGCGGTACCCGCGCCGAGCTGGAAAACTAC
CTGCGCACCGTGCAGATCTTCGACGTGGACTGGTTGTCGGGCATGTCGGTGGGCGTGTTCCCGATCCAGTCCGGCAAGGC
CGAAAAGGTCAGCGCCGATCTGGAGAAGGTATTCGGCGAGCAGAGCAAGACCCCCAGCGCCGGCATGTTCCGCTTCATGC
CGCTGGAAAACGCCAATGCCTTGCTGGTGATTACTCCGCAGCCGCGCTACCTGGACCAGATCCAGCAGTGGCTGGACCGT
ATCGACAGTGCCGGCGGCGGGGTACGGCTGTTTTCGTACGAGTTGAAGTACATCAAGGCCAAGGACCTGGCGGATCGTCT
GTCGGAAGTGTTCGGCGGCCACAGCAGCGGCGGCGATTCCAATGCATCGCTGGTGCCAGGGTCGGAAACCAGCGTGCTTG
GCGGCGCGCTCGGCAATCGCGACAGCAGCATGGGTGGCAGCTCCGGCATGACCGGCGGCAGCATCGGCGACAGCGGCGAT
GGCAGCTCGTCGGGCAGCAGCTTCGGCAGCAGTGGAGGTGGCAGCAGCAGTGGTGGTCTGGGTAACGGCAGCCTGCAGCT
GTCGCCGCGCAGCAATGGCAACGGCGCGGTGACGCTGGATGTGGCCGGCGACAAGGTGGGTGTATCGGCGGTGGCCGAGA
CCAATACCTTGCTGGTGCGCTCTACGCCGCAGGCCTGGAGCTCGATCCGCGATGTCATCGAAAAGCTCGACGTGATGCCG
ATGCAGGTGCATATCGAAGCGCAGGTGGCCGAGGTGAATTTGACTGGCAAGCTGCAGTATGGTGTGAATTGGTACTTCGA
GAACTCGGTGAATGCTGCGGCGGATTCGGCCGCCAATAGCACCGGAATTGGGGCTGGTGCCGGCTTGGCAAGCGCAGCAG
GGAGAAACATTTGGGGAGATATCGCTGGGAAAATCACCGGTGAAAAAGGCGCTCAGTGGACGTTCTTGGGCAAGAATGCG
GCCTCGATCATCCATGCACTTGATGAGGTGACTAATGTGCGTCTTCTGCAAACGCCTTCTGTTTTTGTACGCAACAACGC
CGAGGCAACGCTGAATGTTGGCTCACGTATTGCGATCAATTCGACGTCTATCAATACCGGTCTCGGAAGCGACAGCAGCT
TTTCCTCGGTGCAGTACATCGACACTGGCGTAATCTTGAAAGTGCGTCCGCGTGTGACCAAGGACGGCATGGTGTTCTTG
GATATCGTGCAGGAAGTCAGTAGTCCTGGTGATCGTCCCGCTGCCTGTACTTCGGCTACTGCGACGGTCAATGCCGCCGC
TTGTAACGTTGATATCAATACGCGCCGTGTAAAGACGGAAGCTGCCGTGCAGAGCGGCGATACGATCATGTTGGCCGGTC
TGATCGACGATACGACCAGTGATGGCAGTAACGGAATTCCCTTCCTGAGCAAGCTACCGGTTGTTGGCGCGCTGTTTGGA
TCCAAGAGCCGTAACAGCGCCCGCCGCGAAGTCATCGTGCTGATCACTCCCTCGATCGTGCGCAACCCGCAGGAAGCGCG
CAATCTCACCGACGAATATGGTCAGAAATTCAAGGCCATGGAGCCGCTGAAGCCCAGCCAGAAACCGCAATGA

Upstream 100 bases:

>100_bases
CCTCCGACGATCAGATGCGTGCCATCCGCGAACGCATCGAAGCCCGACGCCGCCAGCTGCAACAGCAGCGCCAGAGCGGC
TCTCCCCCCGGTCAGACCCA

Downstream 100 bases:

>100_bases
GTGCAGCGCTGCCGGTCGTGTTGGTGCCGGTCGGCACCGACGAGGAGGCGTTGGATGCATGTCTGGGGGCGTTGGATGCC
GCCACACCCGCAGGCACGCG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 769

Protein sequence:

>770_residues
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPNVGAAGATQTTAEQSADGKASAKPSPVIRRGSGTMINQSAAS
APAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFS
GGRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANALLVITPQPRYLDQIQQWLDR
IDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGHSSGGDSNASLVPGSETSVLGGALGNRDSSMGGSSGMTGGSIGDSGD
GSSSGSSFGSSGGGSSSGGLGNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
MQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNA
ASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFL
DIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFG
SKSRNSARREVIVLITPSIVRNPQEARNLTDEYGQKFKAMEPLKPSQKPQ

Sequences:

>Translated_770_residues
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPNVGAAGATQTTAEQSADGKASAKPSPVIRRGSGTMINQSAAS
APAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFS
GGRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANALLVITPQPRYLDQIQQWLDR
IDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGHSSGGDSNASLVPGSETSVLGGALGNRDSSMGGSSGMTGGSIGDSGD
GSSSGSSFGSSGGGSSSGGLGNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
MQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNA
ASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFL
DIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFG
SKSRNSARREVIVLITPSIVRNPQEARNLTDEYGQKFKAMEPLKPSQKPQ
>Mature_769_residues
SERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPNVGAAGATQTTAEQSADGKASAKPSPVIRRGSGTMINQSAASA
PAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSG
GRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYL
RTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANALLVITPQPRYLDQIQQWLDRI
DSAGGGVRLFSYELKYIKAKDLADRLSEVFGGHSSGGDSNASLVPGSETSVLGGALGNRDSSMGGSSGMTGGSIGDSGDG
SSSGSSFGSSGGGSSSGGLGNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMPM
QVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAA
SIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLD
IVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGS
KSRNSARREVIVLITPSIVRNPQEARNLTDEYGQKFKAMEPLKPSQKPQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=479, Percent_Identity=26.0960334029228, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1789793, Length=290, Percent_Identity=24.1379310344828, Blast_Score=83, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 79875; Mature: 79744

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPNVGAAGATQTTAEQSADGKASA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
KPSPVIRRGSGTMINQSAASAPAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYV
CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
IAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPS
EECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCC
TASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANA
HHEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCE
LLVITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGHSSGGDS
EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCC
NASLVPGSETSVLGGALGNRDSSMGGSSGMTGGSIGDSGDGSSSGSSFGSSGGGSSSGGL
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
CCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCE
MQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIWGD
EEEEEEEEEEEEEEEEEEEECEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHCCCCCCCH
IAGKITGEKGAQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAIN
HHCEEECCCCCEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCEEEEE
STSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSAT
CCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
ATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFG
EEEEEEEEEECCCCEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHC
SKSRNSARREVIVLITPSIVRNPQEARNLTDEYGQKFKAMEPLKPSQKPQ
CCCCCCCCCEEEEEECCHHHCCCHHHHCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SERMTPRLFPVSLLIGLLAGCATTPPPDVRRDARLDPNVGAAGATQTTAEQSADGKASA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
KPSPVIRRGSGTMINQSAASAPAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYV
CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
IAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPS
EECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCC
TASPSAARGFEVRVVPLKYISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANA
HHEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCE
LLVITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGHSSGGDS
EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCC
NASLVPGSETSVLGGALGNRDSSMGGSSGMTGGSIGDSGDGSSSGSSFGSSGGGSSSGGL
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
CCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCE
MQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLASAAGRNIWGD
EEEEEEEEEEEEEEEEEEEECEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHCCCCCCCH
IAGKITGEKGAQWTFLGKNAASIIHALDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAIN
HHCEEECCCCCEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCEEEEE
STSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSAT
CCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
ATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFG
EEEEEEEEEECCCCEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHC
SKSRNSARREVIVLITPSIVRNPQEARNLTDEYGQKFKAMEPLKPSQKPQ
CCCCCCCCCEEEEEECCHHHCCCHHHHCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]