| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is arnT2 [H]
Identifier: 84622206
GI number: 84622206
Start: 599790
End: 601511
Strand: Direct
Name: arnT2 [H]
Synonym: XOO_0549
Alternate gene names: 84622206
Gene position: 599790-601511 (Clockwise)
Preceding gene: 84622205
Following gene: 84622207
Centisome position: 12.14
GC content: 67.07
Gene sequence:
>1722_bases ATGCTCAAGAACCGCGCTTCCAACGATGTCTGCTTGCTGGCCATGACCGCCGTGCTGTTGATCGGCGCGGGCTTGGGCTT GCGTGACCCATGGCCGGCGGACGAGCCGCGCTTTGCGCTGGTCGCCAAGCAGATGGTCTTGAGCGGCGACTGGTTGTTCC CGCATCGCGGCAATGAACTGTATTCGGACAAGCCACCGATGCTGATGTGGCTGCAGGCGCTGTTCTACACGCTGCTGGGC AACTGGCGGGTGGCGTTCCTGCTGCCGTCGCTGCTGGCCGCGCTGGGCACGCTGGCCTGCGTCTACGATCTGGGCCGACG CCTGTGGACCCGGCGCGTTGGCCTCTATGCGGCCTGGATGTTGTTGTTCACGCTGCACTTCACCTTTCAGGCCAAGAAGG CACAAATCGACCCGCTGGTGGTGTTCTGGATCACCTTGGCCAATTACGGACTGCTGCGCCATCTGCTGATCGGTCCGGCT TGGCGCTGGTGGACGCTAGGCTGGTTCGCCGCCGGTCTGGGTGTGATCACCAAGGTCGTGGGCATCATCGCGCTGCTGAT GCTGATCCCGGCCGGGATGGCCGCGGCGCGCGGCTGGCCGGGTGTGCGCGTGCATGTGCGCGATCGGCGCTTTTGGTTGG GGCCGCTGTTCTTCTTCGTGGCGATCGCGTTGTGGTTCGTGCCGATGATGGTGACCGCGCTCACCGCCGGCCAGCCCGAA TACCGTGTGTATCTCAACGACATCCTGCTGCGCCAGACCGCCAAGCGCTATGCCAGCTCCTGGGATCATGCGCAGCCGGT CTGGTACCACCTGCAAAGCATGGCCACGATGTGGCTGCCGACCATCCTGCTGCTGCCGTGGGCGATCCCCGCATGGCGAC GCCGGCTCAAGCGGCGCGACCCGCGCTATCTGCTGCCGCTGGTCTGGTGGCTGCTGGTGCTGGTGTTCTTCACCATCCCC AGCGGCAAGCGCGATGTCTACATCCTGCCGGCGCTGCCGATGGTCTGCCTGGCGCTGGCGCCGCTGGTGCCCGGCCTGCT GCGTCGGGCTGGCGTGCAGCGGCTGCTGTTCGGATTCGGGCTCTTGCTGGCAGCGGTGTTCAGCGCGGGTGGTGCGGCGA TGCTGATCGGGCATCCGGGCTTCGAGCAGAAGATCATGGACAGCCGCGGGGTGGGCAACGAGGCCACCGACCCGCTGGGC TGGCTGCTGCTCGCGGTAGGGACCTGGGGCATCGCCAGCCTGTTGCTGATGCGCATGCGCCGCTCCGCGTTCGCGGTGGT TTCGTTGCTGGGTGCGTGGTGGGTGGCGTTCGGGCTGGTCTGCTACCCCATCTTCAACGATTCCAGTTCGGCCGGCGCGG TGATGCGCCAGGCCGGGCGCCGCATCGGCCCGGATGCGCAACTCGGGCTGGTGGCATGGAAGGAGCAGAACCTGCTGATG GCCGACCGCCCGGCGCAGACCTTCGGCTTCAAGGTCCCGTGGGAAACGCAATTGCAGCGTGGCGTGGCCTGGCAGGCAGA ACAACCTGGCCAGCGCTGGCTGATGGCGCAAGAGACCGCATTGCTGGCCTGCGTGGATCGTAGCCGCAGCCAGTTGGTGG GCGTGGCCAACCGCCGGCGCTGGTGGCTGGTGCCGGCCGACGCGGTGCGCGGCGAGTGCGTGGCCAGCTCCAGCGAGCGC GCGGTGGAAGCAAAGGAGCAGGGCAACCTGGACACCGAATGA
Upstream 100 bases:
>100_bases AGCAGCACTGCGACGGATTTTTCTACGCGCTTTTGCTAAAAGCCTCCTGACCGCGCGCGGCGTCCAGCGCTCCACTCTCC GCCTCCGACTGCCGCCCGAC
Downstream 100 bases:
>100_bases GCCGTCGGACCCCACAAGTGCGCGCACGTGGCAGGCGTCATCGGCGCGGAAAGCATGCAACTGCCAGCAGCTGTCTAGCA GGGATTCATGCGTCGCATCG
Product: hypothetical protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MLKNRASNDVCLLAMTAVLLIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLIGPA WRWWTLGWFAAGLGVITKVVGIIALLMLIPAGMAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLVWWLLVLVFFTIP SGKRDVYILPALPMVCLALAPLVPGLLRRAGVQRLLFGFGLLLAAVFSAGGAAMLIGHPGFEQKIMDSRGVGNEATDPLG WLLLAVGTWGIASLLLMRMRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMRQAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPADAVRGECVASSSER AVEAKEQGNLDTE
Sequences:
>Translated_573_residues MLKNRASNDVCLLAMTAVLLIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLIGPA WRWWTLGWFAAGLGVITKVVGIIALLMLIPAGMAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLVWWLLVLVFFTIP SGKRDVYILPALPMVCLALAPLVPGLLRRAGVQRLLFGFGLLLAAVFSAGGAAMLIGHPGFEQKIMDSRGVGNEATDPLG WLLLAVGTWGIASLLLMRMRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMRQAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPADAVRGECVASSSER AVEAKEQGNLDTE >Mature_573_residues MLKNRASNDVCLLAMTAVLLIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALFYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLIGPA WRWWTLGWFAAGLGVITKVVGIIALLMLIPAGMAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLVWWLLVLVFFTIP SGKRDVYILPALPMVCLALAPLVPGLLRRAGVQRLLFGFGLLLAAVFSAGGAAMLIGHPGFEQKIMDSRGVGNEATDPLG WLLLAVGTWGIASLLLMRMRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMRQAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPADAVRGECVASSSER AVEAKEQGNLDTE
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=320, Percent_Identity=25.625, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 64373; Mature: 64373
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKNRASNDVCLLAMTAVLLIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALFYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGLYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLIGPAWRWWTLGWFAAGLGVITKVV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLMLIPAGMAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE HHHHHHHHHCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLPLVWWLLVLVFFTIPSGKRDVYILPALPMVCLALAPLVPGLLRRAGVQRLLFGFG CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLAAVFSAGGAAMLIGHPGFEQKIMDSRGVGNEATDPLGWLLLAVGTWGIASLLLMRMR HHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMRQAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWETQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE WWLVPADAVRGECVASSSERAVEAKEQGNLDTE EEEECHHHHCCCHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MLKNRASNDVCLLAMTAVLLIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALFYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRLWTRRVGLYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLIGPAWRWWTLGWFAAGLGVITKVV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLMLIPAGMAAARGWPGVRVHVRDRRFWLGPLFFFVAIALWFVPMMVTALTAGQPE HHHHHHHHHCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLPLVWWLLVLVFFTIPSGKRDVYILPALPMVCLALAPLVPGLLRRAGVQRLLFGFG CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLAAVFSAGGAAMLIGHPGFEQKIMDSRGVGNEATDPLGWLLLAVGTWGIASLLLMRMR HHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMRQAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWETQLQRGVAWQAEQPGQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE WWLVPADAVRGECVASSSERAVEAKEQGNLDTE EEEECHHHHCCCHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA