Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
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Accession | NC_007681 |
Length | 1,767,403 |
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The map label for this gene is 84489311
Identifier: 84489311
GI number: 84489311
Start: 593371
End: 595581
Strand: Direct
Name: 84489311
Synonym: Msp_0500
Alternate gene names: NA
Gene position: 593371-595581 (Clockwise)
Preceding gene: 84489305
Following gene: 84489314
Centisome position: 33.57
GC content: 27.36
Gene sequence:
>2211_bases ATGCAAAAAAGACAACTTCATTCATTAAAACAAAAACTAGCATCAAAACTATATCCTCTAGCACTTCTAAAAAATAAAAA CAAAATAGGAAACCTAAAAAACCTATTCATAACAATAAAAGGATACAGACAAATAAGAAAAAACAATCTATTTGACACAG AATACTATCTAGAAAATCATGAATCAGTAAGAAAAGATGGAATGGATGCATTATTACACTACATATACTATGGAAGTAAA AAAGGATACAATCCATCAATTGAATTTAACACAAACAAATACCTAAAAGAAAACAAAGATGTAGAAAAATCTAATATAAA CCCACTGATACACTATGCAGTATATGGAATAAGTGAAAATAGAAAAAATACTTCATTAACAAAAAAACAAATAGAAAAAC TTAGGGAAAAAATAAATAATGACAACAAAAACAAGTTACCTCTAATAAAAAAACCATTAGTATCAATAATAATCATAACA CACAATGGTGAAAATCATATAAAAAGACTACTAACAAAATTTACCAAACTAAAACAATATAATAACTATGAACTAATAAT ATGGGACAATGCATCAGAAGATAATACAAAAGACACAATAAAAAAATTCACAAATCTAAACATAACATTAATAGAAAATA AAACAAATGAAACATTCTCCAAGGCAAATAATGAAGCTGTAAAAAAAGCAAAAGGAAACTACCTACTATTTTTAAACAAT GATATAGAACCACTAGATGGATTTATAAATCATTTGATGAATGTAATATTAAATAAAGAAAATGTGGGGTGTGTAGGGGC AAGACTAATCTATCCAGACTGTTCAAACTCAAAAATAAATCAGGAAAAATCATACACCATACAACATGAAGGAATAATAT TTAAAGCCTGTGACTATATAAAACCAGTAAATAAAAACAATGGACAAAAATACTATACAAACACAAACATACAAGTCCAA CAAATAATAGCCATAACAGCAGCATGTATGCTAATTAAGAAATCAGTATTTAATAAGGTGGGTGGTTTTCAAGAAGAGTA TGTATATGGTTATGAAGATGTAGATCTATGTCTAAAACTACACAAGAGTGGATATAAAAACTACTACACACCACAAGCAA TGTTATATCACTATGAATTTGGAACACAGGAAATGGAAGAAAATAAAGTAGTAACACAAAGAAGAGAAAAAAATCATGAA ATATTCATAAAAAAATGGAACACATACCTTAAAAAACAACTAAAAGAGGATTTAATAAACAACAACCAAATCATAACAGA TAAAAGCTTAACAATAGCCTTTGTAGTAACACAAGCCCAGAAAAACACAACAGCTGGAGATTATTTTACAGCACAAACAT TAGCAAGTAGTCTTAAAAGAGAATATGGATGGAATATAAAGTACTTGGAAAAAGGTAAAGACTGGTATAACATACCAGAA TATGTGGATGTAATAATAAGTATGCTAGATAATTACAACATAGAAAAAATCAAAACAAACAACAAATACATAATAAAAAT AGCATGGCCACGTAACTGGTTTGACAGATGGATGAATAAAGATTATTTCAAAGACTACAACATAATTCTATCAAGCTCTA AAAAAGCATGTGCTAGTATAACACAAAAAACAGGAAAAAAAGCAATATTCTATCCAATAGCCACAGACACAGACATGTTC AATGAAAATATATCACCACAAAAAAAATATGAAAGTGATTATTGTTTTACAGGAAGTTACTGGATGGCAAAACGTGAAAT AATTGATTTTCTAGATCCAACACAAATAAAACACACATTTAAATTATATGGTGCAAACTGGGATAAAATAGAAAAATTCA AACCATACTATCAGGGATTTATAAACTACAAAGAAATACCACAAATCTATGCCTCAACAAAAATAGTAATAGATGATGCA AACCATGTAACAAAAGAATGGGGCTCAGTAAATAGTAGGGTATTTGATACAATAGCATCTGGAAAACTAGTAATAACAAA TGGAAATCGGGGAAATCAGGACTTATTTAATGGAAAAATACCAGAATATCATTCAAAAGAAGAACTAAAAGATGTAATAA ATTATTATATGGAACATAGTGATAAAAGAAATGAAAAAATAAAAGAATTACAAAAAATAGTGCTAAATAAACATACCTAT ACTATAAGAGCTAAGAAACTTAAAAGAATTATAGAAGAGTATGAATTTTAA
Upstream 100 bases:
>100_bases TAATATATGTAAAAAATAGAATATATTCTTTATTCAAAAATTACAATAACTATTAAAGAATAAAAATATTAACATATACA AAAGAAAGGAAACAATCCAT
Downstream 100 bases:
>100_bases TCTACTATAATTTATTTTGAAGAATTGCTATGAATAGTGATAGTATTAACTTCTTTTTCTTTTTGAATATTTAACTTTTG AAGGTATATCATCAGTAATT
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MQKRQLHSLKQKLASKLYPLALLKNKNKIGNLKNLFITIKGYRQIRKNNLFDTEYYLENHESVRKDGMDALLHYIYYGSK KGYNPSIEFNTNKYLKENKDVEKSNINPLIHYAVYGISENRKNTSLTKKQIEKLREKINNDNKNKLPLIKKPLVSIIIIT HNGENHIKRLLTKFTKLKQYNNYELIIWDNASEDNTKDTIKKFTNLNITLIENKTNETFSKANNEAVKKAKGNYLLFLNN DIEPLDGFINHLMNVILNKENVGCVGARLIYPDCSNSKINQEKSYTIQHEGIIFKACDYIKPVNKNNGQKYYTNTNIQVQ QIIAITAACMLIKKSVFNKVGGFQEEYVYGYEDVDLCLKLHKSGYKNYYTPQAMLYHYEFGTQEMEENKVVTQRREKNHE IFIKKWNTYLKKQLKEDLINNNQIITDKSLTIAFVVTQAQKNTTAGDYFTAQTLASSLKREYGWNIKYLEKGKDWYNIPE YVDVIISMLDNYNIEKIKTNNKYIIKIAWPRNWFDRWMNKDYFKDYNIILSSSKKACASITQKTGKKAIFYPIATDTDMF NENISPQKKYESDYCFTGSYWMAKREIIDFLDPTQIKHTFKLYGANWDKIEKFKPYYQGFINYKEIPQIYASTKIVIDDA NHVTKEWGSVNSRVFDTIASGKLVITNGNRGNQDLFNGKIPEYHSKEELKDVINYYMEHSDKRNEKIKELQKIVLNKHTY TIRAKKLKRIIEEYEF
Sequences:
>Translated_736_residues MQKRQLHSLKQKLASKLYPLALLKNKNKIGNLKNLFITIKGYRQIRKNNLFDTEYYLENHESVRKDGMDALLHYIYYGSK KGYNPSIEFNTNKYLKENKDVEKSNINPLIHYAVYGISENRKNTSLTKKQIEKLREKINNDNKNKLPLIKKPLVSIIIIT HNGENHIKRLLTKFTKLKQYNNYELIIWDNASEDNTKDTIKKFTNLNITLIENKTNETFSKANNEAVKKAKGNYLLFLNN DIEPLDGFINHLMNVILNKENVGCVGARLIYPDCSNSKINQEKSYTIQHEGIIFKACDYIKPVNKNNGQKYYTNTNIQVQ QIIAITAACMLIKKSVFNKVGGFQEEYVYGYEDVDLCLKLHKSGYKNYYTPQAMLYHYEFGTQEMEENKVVTQRREKNHE IFIKKWNTYLKKQLKEDLINNNQIITDKSLTIAFVVTQAQKNTTAGDYFTAQTLASSLKREYGWNIKYLEKGKDWYNIPE YVDVIISMLDNYNIEKIKTNNKYIIKIAWPRNWFDRWMNKDYFKDYNIILSSSKKACASITQKTGKKAIFYPIATDTDMF NENISPQKKYESDYCFTGSYWMAKREIIDFLDPTQIKHTFKLYGANWDKIEKFKPYYQGFINYKEIPQIYASTKIVIDDA NHVTKEWGSVNSRVFDTIASGKLVITNGNRGNQDLFNGKIPEYHSKEELKDVINYYMEHSDKRNEKIKELQKIVLNKHTY TIRAKKLKRIIEEYEF >Mature_736_residues MQKRQLHSLKQKLASKLYPLALLKNKNKIGNLKNLFITIKGYRQIRKNNLFDTEYYLENHESVRKDGMDALLHYIYYGSK KGYNPSIEFNTNKYLKENKDVEKSNINPLIHYAVYGISENRKNTSLTKKQIEKLREKINNDNKNKLPLIKKPLVSIIIIT HNGENHIKRLLTKFTKLKQYNNYELIIWDNASEDNTKDTIKKFTNLNITLIENKTNETFSKANNEAVKKAKGNYLLFLNN DIEPLDGFINHLMNVILNKENVGCVGARLIYPDCSNSKINQEKSYTIQHEGIIFKACDYIKPVNKNNGQKYYTNTNIQVQ QIIAITAACMLIKKSVFNKVGGFQEEYVYGYEDVDLCLKLHKSGYKNYYTPQAMLYHYEFGTQEMEENKVVTQRREKNHE IFIKKWNTYLKKQLKEDLINNNQIITDKSLTIAFVVTQAQKNTTAGDYFTAQTLASSLKREYGWNIKYLEKGKDWYNIPE YVDVIISMLDNYNIEKIKTNNKYIIKIAWPRNWFDRWMNKDYFKDYNIILSSSKKACASITQKTGKKAIFYPIATDTDMF NENISPQKKYESDYCFTGSYWMAKREIIDFLDPTQIKHTFKLYGANWDKIEKFKPYYQGFINYKEIPQIYASTKIVIDDA NHVTKEWGSVNSRVFDTIASGKLVITNGNRGNQDLFNGKIPEYHSKEELKDVINYYMEHSDKRNEKIKELQKIVLNKHTY TIRAKKLKRIIEEYEF
Specific function: Unknown
COG id: COG1216
COG function: function code R; Predicted glycosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 86653; Mature: 86653
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKRQLHSLKQKLASKLYPLALLKNKNKIGNLKNLFITIKGYRQIRKNNLFDTEYYLENH CCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEEEEHHHHHHHCCCCCHHHHHHCH ESVRKDGMDALLHYIYYGSKKGYNPSIEFNTNKYLKENKDVEKSNINPLIHYAVYGISEN HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCCCCEEEEEEEECCCC RKNTSLTKKQIEKLREKINNDNKNKLPLIKKPLVSIIIITHNGENHIKRLLTKFTKLKQY CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHC NNYELIIWDNASEDNTKDTIKKFTNLNITLIENKTNETFSKANNEAVKKAKGNYLLFLNN CCEEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHCCHHHHHHCCCCEEEEECC DIEPLDGFINHLMNVILNKENVGCVGARLIYPDCSNSKINQEKSYTIQHEGIIFKACDYI CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEHHHH KPVNKNNGQKYYTNTNIQVQQIIAITAACMLIKKSVFNKVGGFQEEYVYGYEDVDLCLKL CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHH HKSGYKNYYTPQAMLYHYEFGTQEMEENKVVTQRREKNHEIFIKKWNTYLKKQLKEDLIN HHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCC NNQIITDKSLTIAFVVTQAQKNTTAGDYFTAQTLASSLKREYGWNIKYLEKGKDWYNIPE CCEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH YVDVIISMLDNYNIEKIKTNNKYIIKIAWPRNWFDRWMNKDYFKDYNIILSSSKKACASI HHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHCCCCCCCCCEEEEECCCHHHHHH TQKTGKKAIFYPIATDTDMFNENISPQKKYESDYCFTGSYWMAKREIIDFLDPTQIKHTF HHHCCCEEEEEEECCCHHHHCCCCCCHHHCCCCCEEECCHHHHHHHHHHHCCCHHHEEEE KLYGANWDKIEKFKPYYQGFINYKEIPQIYASTKIVIDDANHVTKEWGSVNSRVFDTIAS EEECCCHHHHHHHCHHHHHHCCHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHHHHHCC GKLVITNGNRGNQDLFNGKIPEYHSKEELKDVINYYMEHSDKRNEKIKELQKIVLNKHTY CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEE TIRAKKLKRIIEEYEF EEEHHHHHHHHHHHCC >Mature Secondary Structure MQKRQLHSLKQKLASKLYPLALLKNKNKIGNLKNLFITIKGYRQIRKNNLFDTEYYLENH CCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEEEEHHHHHHHCCCCCHHHHHHCH ESVRKDGMDALLHYIYYGSKKGYNPSIEFNTNKYLKENKDVEKSNINPLIHYAVYGISEN HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCCCCEEEEEEEECCCC RKNTSLTKKQIEKLREKINNDNKNKLPLIKKPLVSIIIITHNGENHIKRLLTKFTKLKQY CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHC NNYELIIWDNASEDNTKDTIKKFTNLNITLIENKTNETFSKANNEAVKKAKGNYLLFLNN CCEEEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCHHHHHCCHHHHHHCCCCEEEEECC DIEPLDGFINHLMNVILNKENVGCVGARLIYPDCSNSKINQEKSYTIQHEGIIFKACDYI CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEHHHH KPVNKNNGQKYYTNTNIQVQQIIAITAACMLIKKSVFNKVGGFQEEYVYGYEDVDLCLKL CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHH HKSGYKNYYTPQAMLYHYEFGTQEMEENKVVTQRREKNHEIFIKKWNTYLKKQLKEDLIN HHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCC NNQIITDKSLTIAFVVTQAQKNTTAGDYFTAQTLASSLKREYGWNIKYLEKGKDWYNIPE CCEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH YVDVIISMLDNYNIEKIKTNNKYIIKIAWPRNWFDRWMNKDYFKDYNIILSSSKKACASI HHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHCCCCCCCCCEEEEECCCHHHHHH TQKTGKKAIFYPIATDTDMFNENISPQKKYESDYCFTGSYWMAKREIIDFLDPTQIKHTF HHHCCCEEEEEEECCCHHHHCCCCCCHHHCCCCCEEECCHHHHHHHHHHHCCCHHHEEEE KLYGANWDKIEKFKPYYQGFINYKEIPQIYASTKIVIDDANHVTKEWGSVNSRVFDTIAS EEECCCHHHHHHHCHHHHHHCCHHHHHHHHCCCEEEEECCHHHHHHHCCCCHHHHHHHCC GKLVITNGNRGNQDLFNGKIPEYHSKEELKDVINYYMEHSDKRNEKIKELQKIVLNKHTY CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEE TIRAKKLKRIIEEYEF EEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]