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The map label for this gene is asnC [C]

Identifier: 84489114

GI number: 84489114

Start: 354956

End: 355465

Strand: Direct

Name: asnC [C]

Synonym: Msp_0293

Alternate gene names: 84489114

Gene position: 354956-355465 (Clockwise)

Preceding gene: 84489112

Following gene: 84489115

Centisome position: 20.08

GC content: 24.71

Gene sequence:

>510_bases
ATGGATGAAATGTACACTGAATTTGATGCTGAACCAGAAAATATGATATTATCTATGGATGATTTAGATAAAAATATTCT
AGAGTTATTAAGTGATGATGGTCGTAAATCATACAGAAAAATTTCCAGAGAATTAGGTGTTTCAGTAGGAACAGTACATA
ATCGTGTTGATAAATTAACAAAATCTGGTATAATAGATAAATTTGTTCCAGTTATAGATCATGAAAAACTTGGATATACA
TTAACAGCAATTATAGGTTTAGAAATAAAGGGTGGAACAGTAGCTTTCTTAACTGATAAAAAAGAATTTAAAGATAATTT
GTTAGCAGTATATGATGTTACAGGACAATTTGATGGTATTATAATTGCTAAATTTAAAAATACTTTTGAATTAAATAAAT
TCATCAAATTATTACTTAATGAGGAAAATGTAATTAAAACATATACTCAAACTGTTTTAAACATAGTAAAAGAAGAATTA
AATACTTCTATGATTAATTTTGAAGGATAA

Upstream 100 bases:

>100_bases
ATAATAATACCAAATAAAATATAAAAATGTATTAATAAGAAATATTTTTATTTCATTTATATATGGATTAATTAATATTA
CTTATAGTTGGGGTGATTAT

Downstream 100 bases:

>100_bases
TTATTTTTTTAATAATAGAAAAAATATTTTTTACTTTTTTCTATTAATTTATTTTATATTTTTTAATTATAAAAATTCAT
ATTTTCTTATAATACATATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDEMYTEFDAEPENMILSMDDLDKNILELLSDDGRKSYRKISRELGVSVGTVHNRVDKLTKSGIIDKFVPVIDHEKLGYT
LTAIIGLEIKGGTVAFLTDKKEFKDNLLAVYDVTGQFDGIIIAKFKNTFELNKFIKLLLNEENVIKTYTQTVLNIVKEEL
NTSMINFEG

Sequences:

>Translated_169_residues
MDEMYTEFDAEPENMILSMDDLDKNILELLSDDGRKSYRKISRELGVSVGTVHNRVDKLTKSGIIDKFVPVIDHEKLGYT
LTAIIGLEIKGGTVAFLTDKKEFKDNLLAVYDVTGQFDGIIIAKFKNTFELNKFIKLLLNEENVIKTYTQTVLNIVKEEL
NTSMINFEG
>Mature_169_residues
MDEMYTEFDAEPENMILSMDDLDKNILELLSDDGRKSYRKISRELGVSVGTVHNRVDKLTKSGIIDKFVPVIDHEKLGYT
LTAIIGLEIKGGTVAFLTDKKEFKDNLLAVYDVTGQFDGIIIAKFKNTFELNKFIKLLLNEENVIKTYTQTVLNIVKEEL
NTSMINFEG

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=101, Percent_Identity=32.6732673267327, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 19203; Mature: 19203

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEMYTEFDAEPENMILSMDDLDKNILELLSDDGRKSYRKISRELGVSVGTVHNRVDKLT
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
KSGIIDKFVPVIDHEKLGYTLTAIIGLEIKGGTVAFLTDKKEFKDNLLAVYDVTGQFDGI
HCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEECCHHHHCCEEEEEEECCCCCCE
IIAKFKNTFELNKFIKLLLNEENVIKTYTQTVLNIVKEELNTSMINFEG
EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MDEMYTEFDAEPENMILSMDDLDKNILELLSDDGRKSYRKISRELGVSVGTVHNRVDKLT
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
KSGIIDKFVPVIDHEKLGYTLTAIIGLEIKGGTVAFLTDKKEFKDNLLAVYDVTGQFDGI
HCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEECCHHHHCCEEEEEEECCCCCCE
IIAKFKNTFELNKFIKLLLNEENVIKTYTQTVLNIVKEELNTSMINFEG
EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA