Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
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Accession | NC_007681 |
Length | 1,767,403 |
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The map label for this gene is 84489084
Identifier: 84489084
GI number: 84489084
Start: 319889
End: 321088
Strand: Direct
Name: 84489084
Synonym: Msp_0257
Alternate gene names: NA
Gene position: 319889-321088 (Clockwise)
Preceding gene: 84489080
Following gene: 84489085
Centisome position: 18.1
GC content: 23.08
Gene sequence:
>1200_bases ATGGTTGATAATAAATTAAATAAAAAATGGAAAGAAGATTTCTTTGAAATATTTGCAACAAAATCAGATGTTAAAGAGTT GGAAAATGCTGATAAAATTAAAATAGAACATTTTCCACCAGTATTAGGACAGTATTATCCAAGTAATATAGATGAAGATA CACTCATTAAACTATGTGAAGGTAAATTATTTTTGACTAAATCAAAAAAACAACCTGATTATGATGATTCACTTATAAAA ATAGATTATGAAAAAGTTATAAAAACACAATTAAACACATTAATGCAACAACAAATAGCTAAGTTACAAGAAGAAGATCC AAATTTCTTAAAGGATGATGAAAAGGAAATAATTAAGAAGTCATCATTTCCATTTATAAAATTAATGACTCTTGTATATT CTAAGGATACAAAGGATATGTCTTGTAATGATCAAAAACAATGGAAAGAATATATGAATCAATTTATTACCCAACAAATA GTTTTTTCAATAGTTAATACATATTATACAATGAAATTATATCAGGATAATATATACACAACCCTATTTCAAACACCATA TAATAAGGATTATGTATGGAAGGAATATGGATATAATCATGAAGGAATCTGTGTAACATATAACTTTAAAGAAATAAGAA AAATAATAATAGAACAATTACAGAAAATATTCCCAGTATACTATATTAACAGTAAATCTGACATAAATTATGATGTATAC AACTCTGTATATGCATCACTTCTTAAAACAAAAGATAAAATAAATACATATGATAATCAATGGGTATATATAATGAGTTA TAAATATACTGAAACTGAATATACGATGTTAGATAATTTATTAGAACCAGTATACACATATTCAATGACACATTCTAAAA TAAATGAAATATTAAATGGAAATTATCTTGAAATTAAAGATAATCAACTTAACTATAACTATAAAAAATTAATAGAAAAT CTAGTTGATGTTCTCAATTCAAATGAATTTCAAGAAGAACTTAATACTAAACTTCAAGAAGTATATGATATTACTCAAAA TAATATTGATATAGACTTTATGAAACCAGAAGCAGTATATCTTGGAAGGGATTTTCCAGAAGAAAAAATAAAACAAATCA AGGAAATAGTACAAAAAGAAGATATCATGATTTTTAAAATTAAACAATCAGAAGATAAACTATTTAAAGCATTAATATAG
Upstream 100 bases:
>100_bases AAAAAATACAAATCATAATATACATAACTAAGAAGAAATTAAAAAAACTATTATAATTATACATATAATAAAAAAATGGA TTCTAAAAACGGGTGATAAA
Downstream 100 bases:
>100_bases GGATATACATGACAAATACTTCTTATGAAAAATTAGTTGAGGTATATGAAAAAATCAGTAGTACATCAAGTCGTCTAGAA AAACAAGATATTATAGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MVDNKLNKKWKEDFFEIFATKSDVKELENADKIKIEHFPPVLGQYYPSNIDEDTLIKLCEGKLFLTKSKKQPDYDDSLIK IDYEKVIKTQLNTLMQQQIAKLQEEDPNFLKDDEKEIIKKSSFPFIKLMTLVYSKDTKDMSCNDQKQWKEYMNQFITQQI VFSIVNTYYTMKLYQDNIYTTLFQTPYNKDYVWKEYGYNHEGICVTYNFKEIRKIIIEQLQKIFPVYYINSKSDINYDVY NSVYASLLKTKDKINTYDNQWVYIMSYKYTETEYTMLDNLLEPVYTYSMTHSKINEILNGNYLEIKDNQLNYNYKKLIEN LVDVLNSNEFQEELNTKLQEVYDITQNNIDIDFMKPEAVYLGRDFPEEKIKQIKEIVQKEDIMIFKIKQSEDKLFKALI
Sequences:
>Translated_399_residues MVDNKLNKKWKEDFFEIFATKSDVKELENADKIKIEHFPPVLGQYYPSNIDEDTLIKLCEGKLFLTKSKKQPDYDDSLIK IDYEKVIKTQLNTLMQQQIAKLQEEDPNFLKDDEKEIIKKSSFPFIKLMTLVYSKDTKDMSCNDQKQWKEYMNQFITQQI VFSIVNTYYTMKLYQDNIYTTLFQTPYNKDYVWKEYGYNHEGICVTYNFKEIRKIIIEQLQKIFPVYYINSKSDINYDVY NSVYASLLKTKDKINTYDNQWVYIMSYKYTETEYTMLDNLLEPVYTYSMTHSKINEILNGNYLEIKDNQLNYNYKKLIEN LVDVLNSNEFQEELNTKLQEVYDITQNNIDIDFMKPEAVYLGRDFPEEKIKQIKEIVQKEDIMIFKIKQSEDKLFKALI >Mature_399_residues MVDNKLNKKWKEDFFEIFATKSDVKELENADKIKIEHFPPVLGQYYPSNIDEDTLIKLCEGKLFLTKSKKQPDYDDSLIK IDYEKVIKTQLNTLMQQQIAKLQEEDPNFLKDDEKEIIKKSSFPFIKLMTLVYSKDTKDMSCNDQKQWKEYMNQFITQQI VFSIVNTYYTMKLYQDNIYTTLFQTPYNKDYVWKEYGYNHEGICVTYNFKEIRKIIIEQLQKIFPVYYINSKSDINYDVY NSVYASLLKTKDKINTYDNQWVYIMSYKYTETEYTMLDNLLEPVYTYSMTHSKINEILNGNYLEIKDNQLNYNYKKLIEN LVDVLNSNEFQEELNTKLQEVYDITQNNIDIDFMKPEAVYLGRDFPEEKIKQIKEIVQKEDIMIFKIKQSEDKLFKALI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47962; Mature: 47962
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDNKLNKKWKEDFFEIFATKSDVKELENADKIKIEHFPPVLGQYYPSNIDEDTLIKLCE CCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHC GKLFLTKSKKQPDYDDSLIKIDYEKVIKTQLNTLMQQQIAKLQEEDPNFLKDDEKEIIKK CCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SSFPFIKLMTLVYSKDTKDMSCNDQKQWKEYMNQFITQQIVFSIVNTYYTMKLYQDNIYT CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE TLFQTPYNKDYVWKEYGYNHEGICVTYNFKEIRKIIIEQLQKIFPVYYINSKSDINYDVY EEECCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHH NSVYASLLKTKDKINTYDNQWVYIMSYKYTETEYTMLDNLLEPVYTYSMTHSKINEILNG HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NYLEIKDNQLNYNYKKLIENLVDVLNSNEFQEELNTKLQEVYDITQNNIDIDFMKPEAVY CEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE LGRDFPEEKIKQIKEIVQKEDIMIFKIKQSEDKLFKALI ECCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCC >Mature Secondary Structure MVDNKLNKKWKEDFFEIFATKSDVKELENADKIKIEHFPPVLGQYYPSNIDEDTLIKLCE CCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHC GKLFLTKSKKQPDYDDSLIKIDYEKVIKTQLNTLMQQQIAKLQEEDPNFLKDDEKEIIKK CCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SSFPFIKLMTLVYSKDTKDMSCNDQKQWKEYMNQFITQQIVFSIVNTYYTMKLYQDNIYT CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE TLFQTPYNKDYVWKEYGYNHEGICVTYNFKEIRKIIIEQLQKIFPVYYINSKSDINYDVY EEECCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHH NSVYASLLKTKDKINTYDNQWVYIMSYKYTETEYTMLDNLLEPVYTYSMTHSKINEILNG HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NYLEIKDNQLNYNYKKLIENLVDVLNSNEFQEELNTKLQEVYDITQNNIDIDFMKPEAVY CEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE LGRDFPEEKIKQIKEIVQKEDIMIFKIKQSEDKLFKALI ECCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA