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The map label for this gene is trkA1

Identifier: 84489077

GI number: 84489077

Start: 308434

End: 309087

Strand: Direct

Name: trkA1

Synonym: Msp_0250

Alternate gene names: 84489077

Gene position: 308434-309087 (Clockwise)

Preceding gene: 84489075

Following gene: 84489080

Centisome position: 17.45

GC content: 29.66

Gene sequence:

>654_bases
ATGTATGTAATAATAGTTGGTGCTGGAAGAGTAGGATTAAATTTGGCTCAATCTCTAATTAGAGAAGGATTAAACGTTAC
TATTATTGAAAATGATTCTACAATTTCAGAGGAAGTTGCAGAACAGATTAATGCAATGGTAATTCATGGTGATGCCACAT
CAGTTCAAGTATTAGAAGATGCTGATATTACTGATGCTGATGTTTTTGTAGCTGCAACAGGTCATGATACAGTAAATCTC
TTAACATCAGTGTTAAGTCAAAATTATGATAATATAAAAAAGATCATTGCAAGAGTTAATGATCTTGATCATGTTAATGC
ATTTAAAAGAGTTGGAATTGACATAACAGTAAGTCCAGAATCAGCAGTAGCATCATACTTGGAACGTATAATAACAAGGC
CAAAGGTTTCAGATTTAATAATTCTTGGTAGGGGTTCAACAGAATTATTAGATGTTAAATTAGAAAATAAGGATTTATAT
GGTAAAAGAGTTTTAGATTATAGTCCAACAGAAAATTATATTATATGTGCAGTATATGAAGATAATGAATTAATAATTCC
TCAAGAGGATACAGTATTTCATGAAAACCAGAAAATATCAGTTATAACAAAATCAGAATGTGTACAAGAAGTTACAAAAT
TATTTGCACCATAA

Upstream 100 bases:

>100_bases
TTATAATATATTATAAGATAATTTATTTTAGTCAATATCATTTGTTAGAGATATGATACAATAATTTAGATAGATAAAAA
TTTTATTTTTGGTGAAAAAG

Downstream 100 bases:

>100_bases
ACTCATCTTTACTATTTTTTCAGGGAATATTATTAAAATAAGTAGTTTTTTTAAAATAGTTTTAAAATAGGATAAATACC
TATTTTAAAAATTATTGTAG

Product: TrkA1

Products: NA

Alternate protein names: K(+)-uptake protein trkA homolog [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MYVIIVGAGRVGLNLAQSLIREGLNVTIIENDSTISEEVAEQINAMVIHGDATSVQVLEDADITDADVFVAATGHDTVNL
LTSVLSQNYDNIKKIIARVNDLDHVNAFKRVGIDITVSPESAVASYLERIITRPKVSDLIILGRGSTELLDVKLENKDLY
GKRVLDYSPTENYIICAVYEDNELIIPQEDTVFHENQKISVITKSECVQEVTKLFAP

Sequences:

>Translated_217_residues
MYVIIVGAGRVGLNLAQSLIREGLNVTIIENDSTISEEVAEQINAMVIHGDATSVQVLEDADITDADVFVAATGHDTVNL
LTSVLSQNYDNIKKIIARVNDLDHVNAFKRVGIDITVSPESAVASYLERIITRPKVSDLIILGRGSTELLDVKLENKDLY
GKRVLDYSPTENYIICAVYEDNELIIPQEDTVFHENQKISVITKSECVQEVTKLFAP
>Mature_217_residues
MYVIIVGAGRVGLNLAQSLIREGLNVTIIENDSTISEEVAEQINAMVIHGDATSVQVLEDADITDADVFVAATGHDTVNL
LTSVLSQNYDNIKKIIARVNDLDHVNAFKRVGIDITVSPESAVASYLERIITRPKVSDLIILGRGSTELLDVKLENKDLY
GKRVLDYSPTENYIICAVYEDNELIIPQEDTVFHENQKISVITKSECVQEVTKLFAP

Specific function: Part of a potassium transport system [H]

COG id: COG0569

COG function: function code P; K+ transport systems, NAD-binding component

Gene ontology:

Cell location: Peripherally Bound To The Inner Side Of The Inner Membrane Via The Trkg And Trkh Proteins [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RCK N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789685, Length=225, Percent_Identity=24.8888888888889, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006036
- InterPro:   IPR016040
- InterPro:   IPR006037
- InterPro:   IPR003148 [H]

Pfam domain/function: PF02080 TrkA_C; PF02254 TrkA_N [H]

EC number: NA

Molecular weight: Translated: 23930; Mature: 23930

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVIIVGAGRVGLNLAQSLIREGLNVTIIENDSTISEEVAEQINAMVIHGDATSVQVLED
CEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCEEEEECCCCEEEEEEC
ADITDADVFVAATGHDTVNLLTSVLSQNYDNIKKIIARVNDLDHVNAFKRVGIDITVSPE
CCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCH
SAVASYLERIITRPKVSDLIILGRGSTELLDVKLENKDLYGKRVLDYSPTENYIICAVYE
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEECCCCCCCEEEEEEEE
DNELIIPQEDTVFHENQKISVITKSECVQEVTKLFAP
CCEEEECCCCCEEECCCEEEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MYVIIVGAGRVGLNLAQSLIREGLNVTIIENDSTISEEVAEQINAMVIHGDATSVQVLED
CEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCEEEEECCCCEEEEEEC
ADITDADVFVAATGHDTVNLLTSVLSQNYDNIKKIIARVNDLDHVNAFKRVGIDITVSPE
CCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCH
SAVASYLERIITRPKVSDLIILGRGSTELLDVKLENKDLYGKRVLDYSPTENYIICAVYE
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEECCCCCCCEEEEEEEE
DNELIIPQEDTVFHENQKISVITKSECVQEVTKLFAP
CCEEEECCCCCEEECCCEEEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]