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The map label for this gene is yggS [H]

Identifier: 83721068

GI number: 83721068

Start: 1439698

End: 1440396

Strand: Reverse

Name: yggS [H]

Synonym: BTH_I1288

Alternate gene names: 83721068

Gene position: 1440396-1439698 (Counterclockwise)

Preceding gene: 83720279

Following gene: 83719785

Centisome position: 37.81

GC content: 71.96

Gene sequence:

>699_bases
ATGCCCGATCTCGCCGCCCGCCTCGCCTCCGTTCAACGCCGCATCGACGAAGCCGCCCGCGCGGCCGGCCGCGAGCCGCG
CGCGGTCACGCTGCTCGCGGTGTCGAAGACGTTTCCGGCCGACGCGGTGCGCGCCGCCTACGCGGCCGGCCAGCGCGCGT
TCGGCGAGAATTACGTGCAGGAGTCGATCGACAAGATCGATTCGCTCGCCGATCTTCGCGCCGAGCTCGAGTGGCATTTC
ATCGGCCCACTGCAGTCGAACAAGACGCGCCCCGTCGCCGAGCGTTTCGACTGGGTGCATACGATCGACCGGCTCAAGAT
CGCGCAGCGCCTGGCGGAGCAGCGGCCCGCGCACCTGCCGCCGCTGAACGTCTGCGTGCAGGTGAATATCAGCGGCGAGG
CGTCGAAGAGCGGCGTCGCGCCCTCGGACGCGGCCGAACTCGCGCGCGCGATCGCCGCGCTGCCCGCGCTGCGGCTGCGC
GGCCTGATGGCGATCCCCGAGCCCGCGGCCGACCCCGAGGCGAAACGCGCGCCGCACCGCGCGCTGCATGCGCTCTTCGA
GCAACTGCGCGCGGACGGACTCGCGCTCGACACGCTGTCGATGGGCATGTCGGACGATCTCGAGGCCGCTGTCGCCGAAG
GCGCGACGATCGTGCGCATCGGCACCGCGATCTTCGGCGCGCGCGACTACGCCCACTGA

Upstream 100 bases:

>100_bases
CCGCGCCGGTTGTCAGCGCCGGTTGTCCGTATAATTCCCGCATCCGTCGCGCGCCGCGGCACGCCGTCCGGCGCGCGTCT
CATGTTTCATTCGTCCCGCC

Downstream 100 bases:

>100_bases
ACCCACCACCTTTCCCTCAACGGTCTCATTCATCATGAAAATCGCATTCATCGGCGGCGGCAACATGGCGGCCGCGTTGA
TCGGCGGACTCGTCAGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPDLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKIDSLADLRAELEWHF
IGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLR
GLMAIPEPAADPEAKRAPHRALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH

Sequences:

>Translated_232_residues
MPDLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKIDSLADLRAELEWHF
IGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLR
GLMAIPEPAADPEAKRAPHRALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
>Mature_231_residues
PDLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESIDKIDSLADLRAELEWHFI
GPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRG
LMAIPEPAADPEAKRAPHRALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=41.1764705882353, Blast_Score=135, Evalue=2e-32,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=59.4827586206897, Blast_Score=265, Evalue=1e-72,
Organism=Caenorhabditis elegans, GI17533025, Length=226, Percent_Identity=38.4955752212389, Blast_Score=133, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6319435, Length=240, Percent_Identity=37.9166666666667, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=39.7540983606557, Blast_Score=139, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24977; Mature: 24846

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIDKIDSLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLP
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRGLMAIPEPAADPEAKRAPHR
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHH
ALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
HHHHHHHHHHHCCEEHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHCCHHCCC
>Mature Secondary Structure 
PDLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIDKIDSLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLP
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRGLMAIPEPAADPEAKRAPHR
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHH
ALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYAH
HHHHHHHHHHHCCEEHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]