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The map label for this gene is orn [H]

Identifier: 83720885

GI number: 83720885

Start: 1879237

End: 1879926

Strand: Direct

Name: orn [H]

Synonym: BTH_I1670

Alternate gene names: 83720885

Gene position: 1879237-1879926 (Clockwise)

Preceding gene: 83718751

Following gene: 83720370

Centisome position: 49.33

GC content: 65.8

Gene sequence:

>690_bases
ATGTTCTTGCGGAGCCGGCCCGCTCGCCGTTTGCCGGCCCGCCCGGCGGCGCGCGCGCCGCCCGCTCATTTCCCAGGATT
GCTCATGACCGATATCTCCGCCTTGGACGGCCAGCCGGCGCTCGTTCGCAACGAACTGAACCTCGTCTGGCTCGACATGG
AAATGACGGGCCTGAACCCGGACACCGACCGCATCATCGAGATCGCCGTCGTCGTCACCAATTCGACCCTCGACATCGCG
GTCGAAGGGCCCGTGCTCGCGATCCATCAGAGCGACGAGACGCTCGCGAAGATGGACGACTGGAACAAGAACACGCATGG
CCGCTCCGGCCTGATCGACCGCGTGCGCGTGTCGAGCGTCACGGAGGCGGATGCCGCCGCGCAGATCGAGGCGTTTCTCG
GCCAATACGTGCCGCCCGGCAAGTCGCCGATGTGCGGAAACTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTGGATG
CCGGAGCTCGAGCGCTTCTTCCATTACCGGAACCTCGACGTCAGCACGCTCAAGGAGCTGTGCCGGCGCTGGCAGCCCGC
GATCTACAAGGGGTTCCAGAAGCGTGCGATGCATACCGCGCTCGCCGACATCCACGAGTCGATCGACGAGCTCAAGTATT
ACCGCGAGCGCTTTCTGATTCCGGCCGCGCCGGCGGGCGAGACCGCGTAA

Upstream 100 bases:

>100_bases
CAGCTTGGTGCCCGTCATCGCGACGATCGCGACGGCGAAGAGCAGGGTGAAGGTATAGGCGGACATCGAAGGCGCTGGTG
GGTATCTATGCGAGAATTAT

Downstream 100 bases:

>100_bases
GCGGGTAGCGCGCGCCTCGAGGGTTTTCGCGACTCGGCGTGCGCATGCGCGGGCATGTTCGCGCGGCGCGCCGAACGTGC
CGCCACCGGCGTGCGGCGCC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MFLRSRPARRLPARPAARAPPAHFPGLLMTDISALDGQPALVRNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIA
VEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM
PELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA

Sequences:

>Translated_229_residues
MFLRSRPARRLPARPAARAPPAHFPGLLMTDISALDGQPALVRNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIA
VEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM
PELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA
>Mature_229_residues
MFLRSRPARRLPARPAARAPPAHFPGLLMTDISALDGQPALVRNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIA
VEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM
PELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.3988439306358, Blast_Score=174, Evalue=6e-44,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=60.2272727272727, Blast_Score=234, Evalue=4e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=182, Percent_Identity=42.8571428571429, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=188, Percent_Identity=37.2340425531915, Blast_Score=117, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21355135, Length=172, Percent_Identity=40.6976744186046, Blast_Score=153, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 25840; Mature: 25840

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRSRPARRLPARPAARAPPAHFPGLLMTDISALDGQPALVRNELNLVWLDMEMTGLNP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEEEECCCCC
DTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRVSSV
CHHHEEEEEEEEECCEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKEL
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
CRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFLRSRPARRLPARPAARAPPAHFPGLLMTDISALDGQPALVRNELNLVWLDMEMTGLNP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEEEECCCCC
DTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRVSSV
CHHHEEEEEEEEECCEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKEL
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
CRRWQPAIYKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA