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The map label for this gene is ycfD [H]

Identifier: 83720287

GI number: 83720287

Start: 2156595

End: 2157863

Strand: Reverse

Name: ycfD [H]

Synonym: BTH_I1910

Alternate gene names: 83720287

Gene position: 2157863-2156595 (Counterclockwise)

Preceding gene: 83720719

Following gene: 83721024

Centisome position: 56.65

GC content: 64.46

Gene sequence:

>1269_bases
TTGCGATTTTCATCCAATTCTCCCAAGTACGACAGCCATTATACGATGCCCAAACGGCCACTACCCGAACCGTCCGGCCG
TGTGCGCGAACGCACTCGCGCGCCGCTGTCCGAGGCGCCCACCCCGCTTCTCGGCAATCTCAGTCCCGCGCAATTCATGC
GCCGATACTGGCAGAAAAAGCCGCTTCTGATTCGGCAGGCGATCGCCGACATCGCGCCGCCGCTGTCGCGCGACGCGCTG
TTCGAACTTGCGGCCGACTATGACGTCGAATCGCGTCTCGTCACCCATTTTCGTAACAGATGGCAACTGGAACACGGACC
GTTCGAGCCCGAGAATCTGCCGTCCGTGAAGCGCCGCGAATGGACGCTGCTCGTGCAGGGGCTCGATCTGCATGACGACC
GCGCCCGCTCGCTGCTCGAGCGTTTCCGGTTCGTGCCGGACGCGCGCCTCGACGATCTGATGATTTCGTACGCGACGGAC
GGCGGCGGCGTTGGCCCGCATTTCGACTCGTACGATGTGTTCCTGCTGCAGGTGCACGGCAAACGCCGCTGGCGAATCGG
CGCGCAACAGGATCTGTCGCTGCAGGAAGGTTTGCCGCTGAAGGTCCTCGCAAATTTCGAGCCGACCGAAGAATGGGTGC
TCGAACCCGGCGACATGCTGTATCTGCCGCCGCACGTCGCGCACGACGGCATCGCGCTCGGCGAGTGCATGACGTGCTCG
ATCGGCTTCCGAGCCCCGTCCGCAGGCGAGTTGCGCGCGCAGTTCCTCTATCACCTCGCGGAGCGCGGCGGCCTGCGCAC
CCGCGCGAGCGACGACGCGCGGTACCGCGACCCGGCGCAGCCCGCGGTCGACACGCCCGCGATGCTGCCTGCGTCGATGG
TCGAGCGCGTTGCCACGATGCTCGCCGGAATCAAATGGGACGAACGCGATATCGGCGATTTTCTTGGTTGTTACTTGAGC
GAGCCCAAATCGAACGTCGTTTTCGAGCCGCCGCTGCGGCGGCTCGGCGAAGCCGCATTCGTCGCCCAGGCGTCCCGCAA
AGGCATCCGGCTCGACAGGAAAGCGGCGTTGTTGTATAACGCGCGCTCGTACTTCATCAACGGCGACGCGCAACCGCTCG
CAACCGCGGCGAAATGGCTGCCGGAACTGGCCGATACGCGTCGGATGGAGGCGAAACGGTTTGTAACACTCTCCCGGGAC
CCCGCCATGACAGCCCTGCTGCACGAGTGGTATTGTGCGGGCTGGATACGGGTGGGCGACATGAGGTAG

Upstream 100 bases:

>100_bases
TCATAGCCGCCGTGCAGATAGACCATCGGCTCATCGCTCTCCTCGATCAGATTGCCTTGCGCATCCGACAGCTTGTAAGC
GACCGATACGACAGTGTTTT

Downstream 100 bases:

>100_bases
AGTTGCCCGGCCGTATGCCCATACGAACGCATGTTTTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTC
GATAGGAAAGTGCATATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MRFSSNSPKYDSHYTMPKRPLPEPSGRVRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAIADIAPPLSRDAL
FELAADYDVESRLVTHFRNRWQLEHGPFEPENLPSVKRREWTLLVQGLDLHDDRARSLLERFRFVPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGKRRWRIGAQQDLSLQEGLPLKVLANFEPTEEWVLEPGDMLYLPPHVAHDGIALGECMTCS
IGFRAPSAGELRAQFLYHLAERGGLRTRASDDARYRDPAQPAVDTPAMLPASMVERVATMLAGIKWDERDIGDFLGCYLS
EPKSNVVFEPPLRRLGEAAFVAQASRKGIRLDRKAALLYNARSYFINGDAQPLATAAKWLPELADTRRMEAKRFVTLSRD
PAMTALLHEWYCAGWIRVGDMR

Sequences:

>Translated_422_residues
MRFSSNSPKYDSHYTMPKRPLPEPSGRVRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAIADIAPPLSRDAL
FELAADYDVESRLVTHFRNRWQLEHGPFEPENLPSVKRREWTLLVQGLDLHDDRARSLLERFRFVPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGKRRWRIGAQQDLSLQEGLPLKVLANFEPTEEWVLEPGDMLYLPPHVAHDGIALGECMTCS
IGFRAPSAGELRAQFLYHLAERGGLRTRASDDARYRDPAQPAVDTPAMLPASMVERVATMLAGIKWDERDIGDFLGCYLS
EPKSNVVFEPPLRRLGEAAFVAQASRKGIRLDRKAALLYNARSYFINGDAQPLATAAKWLPELADTRRMEAKRFVTLSRD
PAMTALLHEWYCAGWIRVGDMR
>Mature_422_residues
MRFSSNSPKYDSHYTMPKRPLPEPSGRVRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAIADIAPPLSRDAL
FELAADYDVESRLVTHFRNRWQLEHGPFEPENLPSVKRREWTLLVQGLDLHDDRARSLLERFRFVPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGKRRWRIGAQQDLSLQEGLPLKVLANFEPTEEWVLEPGDMLYLPPHVAHDGIALGECMTCS
IGFRAPSAGELRAQFLYHLAERGGLRTRASDDARYRDPAQPAVDTPAMLPASMVERVATMLAGIKWDERDIGDFLGCYLS
EPKSNVVFEPPLRRLGEAAFVAQASRKGIRLDRKAALLYNARSYFINGDAQPLATAAKWLPELADTRRMEAKRFVTLSRD
PAMTALLHEWYCAGWIRVGDMR

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=374, Percent_Identity=34.4919786096257, Blast_Score=189, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 47934; Mature: 47934

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSSNSPKYDSHYTMPKRPLPEPSGRVRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCC
PLLIRQAIADIAPPLSRDALFELAADYDVESRLVTHFRNRWQLEHGPFEPENLPSVKRRE
CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHCC
WTLLVQGLDLHDDRARSLLERFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHG
EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
KRRWRIGAQQDLSLQEGLPLKVLANFEPTEEWVLEPGDMLYLPPHVAHDGIALGECMTCS
CCEEECCCCCCCCHHCCCCEEEEECCCCCHHHHCCCCCEEEECCCCCCCCEECCCEEEEE
IGFRAPSAGELRAQFLYHLAERGGLRTRASDDARYRDPAQPAVDTPAMLPASMVERVATM
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LAGIKWDERDIGDFLGCYLSEPKSNVVFEPPLRRLGEAAFVAQASRKGIRLDRKAALLYN
HHCCCCCHHHHHHHHHHHHCCCCCCCEECCHHHHHCHHHHHHHHHCCCCCCCHHHHEEEE
ARSYFINGDAQPLATAAKWLPELADTRRMEAKRFVTLSRDPAMTALLHEWYCAGWIRVGD
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCEEEECC
MR
CC
>Mature Secondary Structure
MRFSSNSPKYDSHYTMPKRPLPEPSGRVRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKK
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCC
PLLIRQAIADIAPPLSRDALFELAADYDVESRLVTHFRNRWQLEHGPFEPENLPSVKRRE
CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHCC
WTLLVQGLDLHDDRARSLLERFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHG
EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
KRRWRIGAQQDLSLQEGLPLKVLANFEPTEEWVLEPGDMLYLPPHVAHDGIALGECMTCS
CCEEECCCCCCCCHHCCCCEEEEECCCCCHHHHCCCCCEEEECCCCCCCCEECCCEEEEE
IGFRAPSAGELRAQFLYHLAERGGLRTRASDDARYRDPAQPAVDTPAMLPASMVERVATM
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LAGIKWDERDIGDFLGCYLSEPKSNVVFEPPLRRLGEAAFVAQASRKGIRLDRKAALLYN
HHCCCCCHHHHHHHHHHHHCCCCCCCEECCHHHHHCHHHHHHHHHCCCCCCCHHHHEEEE
ARSYFINGDAQPLATAAKWLPELADTRRMEAKRFVTLSRDPAMTALLHEWYCAGWIRVGD
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCEEEECC
MR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]