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The map label for this gene is csd [H]

Identifier: 83720072

GI number: 83720072

Start: 2008914

End: 2010152

Strand: Reverse

Name: csd [H]

Synonym: BTH_I1794

Alternate gene names: 83720072

Gene position: 2010152-2008914 (Counterclockwise)

Preceding gene: 83721302

Following gene: 83719528

Centisome position: 52.77

GC content: 70.7

Gene sequence:

>1239_bases
ATGGGTGACATGCTGCGTTCGACCACGATGGCGAGCGCCTTCCCGGCGCTCGCGCAGCGCGTGAACGGCGCGCCGCTCGC
GTATCTCGACAACGCGGCGACGACGCACGTGCCGCAGCCCGTTCTCGCCGCGATCCGCGGCTTCGACGAGCACGATCGCG
CCAACATCCACCGCGGCGTCCACACGCTCAGCCAACGCGCCACCGATGCCTACGAGCGCTCGCGCGACACGCTCGCGCGC
TTCGTCGGTGCAAGCGACGATCACCTGCTCGTCTTCACGTCGGGCACGACCGATTCGCTGAATCTCGTCGCGCACGGGCT
GTCGCTCGCGGGCCACACGCGATCCGTGCTGCGGGAAGGCGACGAGATCGTCGTCAGCGCACTCGAGCATCACGCGAACC
TCGTCCCGTGGCAGATGGCCGCGCGTCGTTGCGGCGCGACACTGCGAATCCTGCATCCCGATTCGCACGGCCGCCTGCAT
GTGCAGGATCTCGAACGATTGCTGACGCCGCGCACGCGCGTGTTCGCGGTCACGGCGTGCTCGAACGCGACGGGCGAGCG
GCCGCCCTACGAGGCGCTGCTCGCCGCCGCACGGGCGGCCGGCGCGCTGACGGTGCTCGACGCCGCTCAGGCGGTAGGCC
ATGAAGTGCCGGACCTGTCAAAGCTCGCGTGCGATTTCATGGCGTTCTCCGGCCACAAGATGTACGGGCCGATGGGAACG
GGCGCGCTCGTCGGCCGCCGGGACGCGCTCGAGCGGCTCGTCCCGCTGCGCTTCGGCGGCGACATGGTGAGCTGGGTCGG
CGAGACGGACGCGACGTTCGCCGCGCTGCCCGCGCGGCTCGAAGGCGGCACGCCGAACGTCGCCGGCGCGGTCGGAATCG
CGGCCGCCGCCGACTATATCGACGCGATCGGCCGCACCCTGATCGATGCCCACGTGCGCGCGCTGCGCGATCACGCCGCA
GCGGGTCTCGCGGCGCTCGACGGCGTGACCGTGCTCGCGCCGCAGTCGCCTTCGGCGATCGTGTCCTTCGTCGCCGACGA
CGCGCATCCGCACGATATCGGCACATTACTCGACGAGCGCGGCATCGCCGTGCGCACGGGTTTCCACTGCGCGCAGCCGC
TTCTCGACAGGCTCGGCTGCGGGCCGACGACGCGCGCGTCGTTCGCGCTCTACAACACGCACGACGAGGTCGAGCGCCTC
GTCGCGGGCGTCGCGCAAGCATTGAAGGTACTGAGATGA

Upstream 100 bases:

>100_bases
CGCGGCATCGACACGCCGGGCAGACTGGAGACGCTCGGCGGCGACGCGCTGCTCGCACGCGAAGTCGCCCGGCATCTCGC
CGAACAAGCGGAGGCGCATC

Downstream 100 bases:

>100_bases
ATCCCACTGCGTCCCCCACCGTTCCAAGCGACGCGCAAAGCACGCTCTATCAGGAGCTCGTCGTCGAGCACAAGCGCGCG
CCGCGCCACTTCGGCAAGCT

Product: cysteine desulfurase SufS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MGDMLRSTTMASAFPALAQRVNGAPLAYLDNAATTHVPQPVLAAIRGFDEHDRANIHRGVHTLSQRATDAYERSRDTLAR
FVGASDDHLLVFTSGTTDSLNLVAHGLSLAGHTRSVLREGDEIVVSALEHHANLVPWQMAARRCGATLRILHPDSHGRLH
VQDLERLLTPRTRVFAVTACSNATGERPPYEALLAAARAAGALTVLDAAQAVGHEVPDLSKLACDFMAFSGHKMYGPMGT
GALVGRRDALERLVPLRFGGDMVSWVGETDATFAALPARLEGGTPNVAGAVGIAAAADYIDAIGRTLIDAHVRALRDHAA
AGLAALDGVTVLAPQSPSAIVSFVADDAHPHDIGTLLDERGIAVRTGFHCAQPLLDRLGCGPTTRASFALYNTHDEVERL
VAGVAQALKVLR

Sequences:

>Translated_412_residues
MGDMLRSTTMASAFPALAQRVNGAPLAYLDNAATTHVPQPVLAAIRGFDEHDRANIHRGVHTLSQRATDAYERSRDTLAR
FVGASDDHLLVFTSGTTDSLNLVAHGLSLAGHTRSVLREGDEIVVSALEHHANLVPWQMAARRCGATLRILHPDSHGRLH
VQDLERLLTPRTRVFAVTACSNATGERPPYEALLAAARAAGALTVLDAAQAVGHEVPDLSKLACDFMAFSGHKMYGPMGT
GALVGRRDALERLVPLRFGGDMVSWVGETDATFAALPARLEGGTPNVAGAVGIAAAADYIDAIGRTLIDAHVRALRDHAA
AGLAALDGVTVLAPQSPSAIVSFVADDAHPHDIGTLLDERGIAVRTGFHCAQPLLDRLGCGPTTRASFALYNTHDEVERL
VAGVAQALKVLR
>Mature_411_residues
GDMLRSTTMASAFPALAQRVNGAPLAYLDNAATTHVPQPVLAAIRGFDEHDRANIHRGVHTLSQRATDAYERSRDTLARF
VGASDDHLLVFTSGTTDSLNLVAHGLSLAGHTRSVLREGDEIVVSALEHHANLVPWQMAARRCGATLRILHPDSHGRLHV
QDLERLLTPRTRVFAVTACSNATGERPPYEALLAAARAAGALTVLDAAQAVGHEVPDLSKLACDFMAFSGHKMYGPMGTG
ALVGRRDALERLVPLRFGGDMVSWVGETDATFAALPARLEGGTPNVAGAVGIAAAADYIDAIGRTLIDAHVRALRDHAAA
GLAALDGVTVLAPQSPSAIVSFVADDAHPHDIGTLLDERGIAVRTGFHCAQPLLDRLGCGPTTRASFALYNTHDEVERLV
AGVAQALKVLR

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=233, Percent_Identity=29.1845493562232, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI156713448, Length=325, Percent_Identity=26.7692307692308, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1787970, Length=399, Percent_Identity=40.6015037593985, Blast_Score=312, Evalue=3e-86,
Organism=Escherichia coli, GI1789175, Length=384, Percent_Identity=41.1458333333333, Blast_Score=264, Evalue=6e-72,
Organism=Escherichia coli, GI48994898, Length=235, Percent_Identity=33.6170212765957, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI193211090, Length=363, Percent_Identity=25.3443526170799, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI25143064, Length=233, Percent_Identity=27.4678111587983, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI25147498, Length=236, Percent_Identity=27.5423728813559, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6319831, Length=405, Percent_Identity=28.1481481481481, Blast_Score=104, Evalue=3e-23,
Organism=Drosophila melanogaster, GI20129463, Length=247, Percent_Identity=31.1740890688259, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 43588; Mature: 43457

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDMLRSTTMASAFPALAQRVNGAPLAYLDNAATTHVPQPVLAAIRGFDEHDRANIHRGV
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
HTLSQRATDAYERSRDTLARFVGASDDHLLVFTSGTTDSLNLVAHGLSLAGHTRSVLREG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
DEIVVSALEHHANLVPWQMAARRCGATLRILHPDSHGRLHVQDLERLLTPRTRVFAVTAC
HHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHCCCCEEEEEEEC
SNATGERPPYEALLAAARAAGALTVLDAAQAVGHEVPDLSKLACDFMAFSGHKMYGPMGT
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCC
GALVGRRDALERLVPLRFGGDMVSWVGETDATFAALPARLEGGTPNVAGAVGIAAAADYI
CHHHCCHHHHHHHHCHHCCCCHHHHCCCCCCHHHHCCHHCCCCCCCHHHHHHHHHHHHHH
DAIGRTLIDAHVRALRDHAAAGLAALDGVTVLAPQSPSAIVSFVADDAHPHDIGTLLDER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHCC
GIAVRTGFHCAQPLLDRLGCGPTTRASFALYNTHDEVERLVAGVAQALKVLR
CCEEECCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
GDMLRSTTMASAFPALAQRVNGAPLAYLDNAATTHVPQPVLAAIRGFDEHDRANIHRGV
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
HTLSQRATDAYERSRDTLARFVGASDDHLLVFTSGTTDSLNLVAHGLSLAGHTRSVLREG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
DEIVVSALEHHANLVPWQMAARRCGATLRILHPDSHGRLHVQDLERLLTPRTRVFAVTAC
HHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHCCCCEEEEEEEC
SNATGERPPYEALLAAARAAGALTVLDAAQAVGHEVPDLSKLACDFMAFSGHKMYGPMGT
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCC
GALVGRRDALERLVPLRFGGDMVSWVGETDATFAALPARLEGGTPNVAGAVGIAAAADYI
CHHHCCHHHHHHHHCHHCCCCHHHHCCCCCCHHHHCCHHCCCCCCCHHHHHHHHHHHHHH
DAIGRTLIDAHVRALRDHAAAGLAALDGVTVLAPQSPSAIVSFVADDAHPHDIGTLLDER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHCC
GIAVRTGFHCAQPLLDRLGCGPTTRASFALYNTHDEVERLVAGVAQALKVLR
CCEEECCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]