Click here to switch to the map view.

The map label for this gene is yicC [C]

Identifier: 83719925

GI number: 83719925

Start: 1784845

End: 1785768

Strand: Direct

Name: yicC [C]

Synonym: BTH_I1585

Alternate gene names: 83719925

Gene position: 1784845-1785768 (Clockwise)

Preceding gene: 83719772

Following gene: 83719185

Centisome position: 46.86

GC content: 68.61

Gene sequence:

>924_bases
ATGATCTACAGCATGACGGGCTACGCGAGCGCGACGCGCGATCTCGCGACCGCCTCCGGCAATGGCGGCACGAGCGTATC
GGTCGAACTGCGGACCGTGAATTCGCGGTTCCTCGACCTGAATTTCCGGATGCCGGACGATGTGCGCGCGTGCGAACCGG
CGTTGCGCGAGATGCTGATGAACAAGCTGTCGCGCGGCAAGGTCGACGTGCGCATCAACCTGCAGCGCGGGGACCAGAAC
GTGAACGCGGGCGCGCTGAACCATGCGGCGCTCGGCCAGCTCGCGGAGCTCGAGCGCGCGGTGCTCGACGCGTTTCCGGG
CGTGGGCCGCCTGCGCGCGGGCGAGATCCTGCGCTGGCCGGGCGTGCTCGCCGAGAGCGGCGTGTCGGCCGACGCGCTGC
GCGAAGCGGTGCTCGCGTGCGGCAAGGAAGCGGTCGGCGAGCTCGTCGTCGTGCGCTCGCGCGAGGGCGCGCAGCTCGCG
ACGATGCTGCTCGCGAACGTGGCCGAAATGGAGGCCATCGTCGCGCGTATCGCGCCGCTCGTGCCGGAGCTGATCGCCAA
GCATCAGCAGAAGATCGTCGAGCGGCTGCAGGAGGCGCTCGGCGTCGCGGCGCCGGAAGGCGGCGCGCCCGTCGTGTCGC
GCGAGGAAGCGGCCGAGCGCATCCGTCAGGAAGTGACGATGTACGGCATCCGCATCGACATCGCGGAAGAACTGTCGCGC
CTCACCGCGCATCTGAACGAGACGCGCCACGTGATCGAGAAGGGCGGCCGCGTCGGCAAGCGTCTCGACTTCATGATGCA
GGAGCTGAACCGCGAGGCGAATACGCTCGGCTCGAAGGCGGCCGCGAAGGAACTCGCGGACGCGTCGATGGCGCTCAAGC
TGCTGATCGAGCAGATGCGCGAGCAAGTGCAAAACCTGGAGTAA

Upstream 100 bases:

>100_bases
GCAAAAATGGGATAATGCATGTTTCGCGCCCCGCGCCTCGTAAGCGCCGGGCGTCTCGAATCCTTCCGGCCCGCTGGGCC
ATCAAACGACGGGACGAACG

Downstream 100 bases:

>100_bases
CGCAACATGACCGATTCGAACCGCGGCGGCGCGGCAGCCCATTCGCTGCACGCCGGCGTCTATCCCGGCAATCTCTTCAT
GGTCGTCGCGCCGTCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQN
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVGELVVVRSREGAQLA
TMLLANVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPVVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE

Sequences:

>Translated_307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQN
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVGELVVVRSREGAQLA
TMLLANVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPVVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE
>Mature_307_residues
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLMNKLSRGKVDVRINLQRGDQN
VNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWPGVLAESGVSADALREAVLACGKEAVGELVVVRSREGAQLA
TMLLANVAEMEAIVARIAPLVPELIAKHQQKIVERLQEALGVAAPEGGAPVVSREEAAERIRQEVTMYGIRIDIAEELSR
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMREQVQNLE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=310, Percent_Identity=36.7741935483871, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33324; Mature: 33324

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLM
CEEECCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHH
NKLSRGKVDVRINLQRGDQNVNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWP
HHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
GVLAESGVSADALREAVLACGKEAVGELVVVRSREGAQLATMLLANVAEMEAIVARIAPL
CHHHHCCCCHHHHHHHHHHHCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VPELIAKHQQKIVERLQEALGVAAPEGGAPVVSREEAAERIRQEVTMYGIRIDIAEELSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHH
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQVQNLE
HHHHCCC
>Mature Secondary Structure
MIYSMTGYASATRDLATASGNGGTSVSVELRTVNSRFLDLNFRMPDDVRACEPALREMLM
CEEECCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHH
NKLSRGKVDVRINLQRGDQNVNAGALNHAALGQLAELERAVLDAFPGVGRLRAGEILRWP
HHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
GVLAESGVSADALREAVLACGKEAVGELVVVRSREGAQLATMLLANVAEMEAIVARIAPL
CHHHHCCCCHHHHHHHHHHHCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VPELIAKHQQKIVERLQEALGVAAPEGGAPVVSREEAAERIRQEVTMYGIRIDIAEELSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHH
LTAHLNETRHVIEKGGRVGKRLDFMMQELNREANTLGSKAAAKELADASMALKLLIEQMR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQVQNLE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]