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The map label for this gene is secD [H]

Identifier: 83719918

GI number: 83719918

Start: 1424585

End: 1426606

Strand: Reverse

Name: secD [H]

Synonym: BTH_I1276

Alternate gene names: 83719918

Gene position: 1426606-1424585 (Counterclockwise)

Preceding gene: 83719987

Following gene: 83719393

Centisome position: 37.45

GC content: 68.5

Gene sequence:

>2022_bases
ATGAATCGTTATCCAATCTGGAAATATGTGGTGATGGTCGTGGCGCTCGCCATCGGCTTTCTGTACACATTGCCCAACTT
CTTCGGCGAAGCGCCGGCGGTGCAGGTATCGAGCGGCAAGGCCACGGTCAAGCTCGGCGCCGATACGCTCGCGCAGGTCG
AGGCAGCGCTGAAGGCCAACCAGGTCGCGGCCGACGACGTCACGTTCGACAACTCCAGCGCCAACGCGACGATCCGCGTG
CGCCTGAAGGACACCGACACGCAGTTGCGCGTGAAGGACATGCTGCAGAAGACGCTGAACGCCGATCCGAACGATCCGCA
GTACATCGTCGCGCTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACCGCGCTGCACGCGCTGCCGATGTATCTCGGCC
TCGATCTGCGCGGCGGCGTCCACTTCCTGCTGCAAGTCGACATGACGGGCGCGCTGACGAAGAAGCTCGATTCCGACGCG
TCCGACGCCCGCACGCAGCTGCGCGACAAGGGCATCCGCGACGGCGGCGTCGCCCGCGTCGACCAGACTGTCGTCGCGAA
CTTCGCCGACCAGGACACCGCCGAGCAGGCGCGCAAGCTGCTCGTCTCGTCCGTCTCCGAACTCCAGTGGGCGACGCAGC
CGGGCGGCGGCGGCTATCAGGTCGTCGGCACGTTCACGCCGGCCGTCCAGAAGGCCGTCGAGGAAGCGGCGCTCAAGCAG
AACCTGACGACGCTGCACAACCGCGTCAACGAGCTCGGCGTGTCCGAGCCGATCCTCCAGCAGCAGGGCAACGACCGCAT
CGTCGTCGAGCTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACGGCGACGCTCGAGGCGCGCC
TGGCCGATCCGCTCAACACGCATCCGAATCCCAACGATCCGGTGCCGCCGGGCGAGGAACTGTTCACGCAGGGCAACCAG
GTGCCGGTGCTGCTCAAGAAGCAGGTGATCTTCACGGGCGACCGCATCATCGACGCATCCGCGGGCTTCGACGAGCATCA
GCGTCCGTCCGTCAACATCCGCCTCGATTCGGCGGGCGGCCGCGCGGTGCGCGCGGTGTCGCGCGAGAACATCGGCAAGC
CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACCGTCGCGACGATCCAGTCGGAGCTCGGCGACCGC
TTCCAGATCACGGGCCAGCCGACTCCGCAGGCCGCCGCCGATCTCGCGCTGCTGCTGCGCGCGGGCTCGCTCGCCGCGCC
GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCGGACAACATCCGGATGGGCTTCCATTCGGTGATCT
GGGGCTTCGTCGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTCGTGTCGGTGCTCGGCCTGTCGGTG
AACCTGCTGCTGCTCGTCGCGGTGCTGTCGCTGATGCAGGCGACGCTCACGCTGCCCGGCATCGCGGCCATCGCGCTCGC
GCTCGGCATGGCGATCGACTCGAATGTGCTGATCAACGAGCGCATCCGCGAAGAACTGCGCCGCGGCGCATCGCCGCAGA
TCGCGATCCAGGAAGGCTATGCGCATGCATGGGCGACGATTCTCGATTCGAACGTGACGACGCTGATCGCGGGCCTCGCG
CTGCTCGCGTTCGGCTCGGGCCCGGTGCGCGCGTTCGCGATCGTGCACTGTCTCGGCATCCTGACGTCGATGTTCTCCGC
AGTGTTCTTCTCGCGCGGCCTCGTGAACCTCTGGTACGGCGGGCGCAAGAAGCTGCAGTCGCTCGCGATCGGCCAGGTGT
GGCGCCCCGCCGAGGCCGGCGCCGCGCCGCAGCTCGGCCAGGACGCGCGCGCGAACGCGCCGCAGCCCGGCGCACGCGTG
GCCGCGCCGAAGCAGCCGGCGGGCGCGCCGCGCACCGGCAAGCCGGTCGCGCGCCGCCGCTCGGGCCCGGGCGTGCCGCC
CAAGCAGGGCTCGTCCAACTAA

Upstream 100 bases:

>100_bases
CCCCGCGTCCGGCCGCCCGGCGCCCGCGCAGCGAAGCGCGCGGCCGAGGCCGGCGCCGGACGCGGCGCCATTCCAGCCAA
CCATCCCGTTCGGCCCCCTC

Downstream 100 bases:

>100_bases
GCGCCGGAGACGCACATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGTTGGTCTTCAACGTGGT
CTCGCTCGTGACGTTCCTCG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV
AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN

Sequences:

>Translated_673_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV
AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN
>Mature_673_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
VPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARV
AAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=44.4267515923567, Blast_Score=506, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 71763; Mature: 71763

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHHHHHHHHHHC
QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPR
CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
DQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT
HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQVPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHHCCCCCEEEEECEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC
RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARVAAPKQPAGAPRTGKPVARRR
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
SGPGVPPKQGSSN
CCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHHHHHHHHHHC
QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYIVALNLQSASPR
CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
DQTVVANFADQDTAEQARKLLVSSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT
HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQVPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHHCCCCCEEEEECEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC
RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLQSLAIGQVWRPAEAGAAPQLGQDARANAPQPGARVAAPKQPAGAPRTGKPVARRR
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
SGPGVPPKQGSSN
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]