Click here to switch to the map view.

The map label for this gene is qseD [H]

Identifier: 83719876

GI number: 83719876

Start: 1371599

End: 1372591

Strand: Direct

Name: qseD [H]

Synonym: BTH_I1223

Alternate gene names: 83719876

Gene position: 1371599-1372591 (Clockwise)

Preceding gene: 83718486

Following gene: 83718927

Centisome position: 36.01

GC content: 68.68

Gene sequence:

>993_bases
GTGATTCTTCCCTCGCACTCGCTTTGCGCAGCAAAGGCACGCATGGAACTCAAATGGCTCGAAGACTTCGTGTCGCTCGC
GGAAACGCGCAGCTTCAGCCGCTCGGCCGAGCTTCGGCACGTGTCGCAACCCGCGTTTTCGCGCCGGATCCAGGCGCTCG
AAGCGTGGCTCGCGACCGAGCTGATCGATCGCTCGGTGTACCCGACCCGTCTCACGCAGGCGGGCCAGGTGTTCTACGAG
CAGGCGCTCGTGATGCTGTCGCAGGCGCACGAGGCGCGCACGCTGCTGCGCGGCCACGTTGGCGCGCCCGTGCCGACGAT
CGAATTCGCGGTGCCGCACACGCTGTCGCTCACGTACTTCCCGCGCTGGCTGCAGCGGATCGAGGCGAAGATGGGGCAGG
TGCATACCCGGCTGCGTGCGCTGAACGTGCATGATGCGGTGCTCTCGCTGGTCGAGGGCGGCTGCGACCTCGTGATGGGC
TATCACCATCCGAGCCATCCCGTCGCGCTCGATCCGGCCCGCTACGACATGCTGACGCTCGGCGCGGAGCCGATCAGCCC
GTTCTCGGCGCCCGGCCGCGGCGGCCGCGCGCGCTATGCGCTGCCCGGCACGGCCGATGCGCCCGTGCCGTATCTGTCGT
ACACGCCCAATGCGTACCTCGGCCGGATGACCGAGGTGATCATCGCGAACGCGCGCGCGCCGCTCTTTCTCGACAAGGTC
TACGAGACCGACATGGCCGAGGCGCTGAAGGCGATGGCGCTCGCTGGGCACGGCGTTGCTTTTCTGCCGCACAGCGCGGT
CGAGGATGCGCTCGCGGGCGGCCGCCTCGTGAAACTCGGCCGTGCGGTGAAGGGCGCCGCGGAGCCGTTTACGCTGACAA
TGGAGATCCGCCTGTACCGGGACAAGCTCGCGGTGCAGGGCGACGAGCCGCGGCAAAAACTCGTGCGCGCGCTGTGGGAT
GTCGTGCGCGAGGAACTGGGCGCGGCCGCCTGA

Upstream 100 bases:

>100_bases
CACAGGGGGGGCTTCGGCCCGTGCGCGCCCATGCGTCCATGCGCCGACGCTCCGACGCTCCGACGCGCCGGGCGATCTGC
GCCACCGACCGTTAAAATGC

Downstream 100 bases:

>100_bases
CAGTCGCTGCGGCCCCGGCCATGCCATGGCCCTGACGCCCAGCACGGTTCGCCCGTGCGGCTTTTCGGCGGGGGGCGGCA
ATCGCTACATCGGGCCGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MILPSHSLCAAKARMELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQVFYE
QALVMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMG
YHHPSHPVALDPARYDMLTLGAEPISPFSAPGRGGRARYALPGTADAPVPYLSYTPNAYLGRMTEVIIANARAPLFLDKV
YETDMAEALKAMALAGHGVAFLPHSAVEDALAGGRLVKLGRAVKGAAEPFTLTMEIRLYRDKLAVQGDEPRQKLVRALWD
VVREELGAAA

Sequences:

>Translated_330_residues
MILPSHSLCAAKARMELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQVFYE
QALVMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMG
YHHPSHPVALDPARYDMLTLGAEPISPFSAPGRGGRARYALPGTADAPVPYLSYTPNAYLGRMTEVIIANARAPLFLDKV
YETDMAEALKAMALAGHGVAFLPHSAVEDALAGGRLVKLGRAVKGAAEPFTLTMEIRLYRDKLAVQGDEPRQKLVRALWD
VVREELGAAA
>Mature_330_residues
MILPSHSLCAAKARMELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQVFYE
QALVMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMG
YHHPSHPVALDPARYDMLTLGAEPISPFSAPGRGGRARYALPGTADAPVPYLSYTPNAYLGRMTEVIIANARAPLFLDKV
YETDMAEALKAMALAGHGVAFLPHSAVEDALAGGRLVKLGRAVKGAAEPFTLTMEIRLYRDKLAVQGDEPRQKLVRALWD
VVREELGAAA

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=269, Percent_Identity=34.5724907063197, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36321; Mature: 36321

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILPSHSLCAAKARMELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LIDRSVYPTRLTQAGQVFYEQALVMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYF
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHH
PRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCHHHHEEE
GAEPISPFSAPGRGGRARYALPGTADAPVPYLSYTPNAYLGRMTEVIIANARAPLFLDKV
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCHHHHHH
YETDMAEALKAMALAGHGVAFLPHSAVEDALAGGRLVKLGRAVKGAAEPFTLTMEIRLYR
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEEEEE
DKLAVQGDEPRQKLVRALWDVVREELGAAA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILPSHSLCAAKARMELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LIDRSVYPTRLTQAGQVFYEQALVMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYF
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHH
PRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEECCCHHHHEEE
GAEPISPFSAPGRGGRARYALPGTADAPVPYLSYTPNAYLGRMTEVIIANARAPLFLDKV
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCHHHHHH
YETDMAEALKAMALAGHGVAFLPHSAVEDALAGGRLVKLGRAVKGAAEPFTLTMEIRLYR
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEEEEE
DKLAVQGDEPRQKLVRALWDVVREELGAAA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]