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The map label for this gene is rimM [H]

Identifier: 83719306

GI number: 83719306

Start: 1871821

End: 1872510

Strand: Direct

Name: rimM [H]

Synonym: BTH_I1662

Alternate gene names: 83719306

Gene position: 1871821-1872510 (Clockwise)

Preceding gene: 83718427

Following gene: 83720405

Centisome position: 49.14

GC content: 68.55

Gene sequence:

>690_bases
ATGGCTGGTCACGATTCCGGTAGCGCGAAGCGCGGGCGGTCGCCGTCGTTCGGCGTATTCGTCCGCAAGCCGGTCGAGCG
CGCGCCCACGAAAGGGGCGGGCGACGGCGCGGCTGATTCGGAAGCAATTCGCATCGATGCGGCGCAGCCGTGGCCGGACG
ATGCGGTCGAGGTCGGCGCGGTGGTCGATGCGTACGGCCTCAAGGGCTGGGTCAAGCTCGTGGCCCATGCCGGGGCGGGG
CGGGGCGGCGATGCGCTGCTCAAGGCTCGCGACTGGTGGCTGCAAAAGGGGGGCGAGCGGAAGTTCGCGCGCGTCACGCA
GGCGAAGCTGCACAGCGACGCGGTCGTCGCGCATCCGGCCGGCTCTGTCGATCGCGATACGGCGCTTGCGCTGCGCGGCT
TTCGCGTATTCGTGCGCCGCGGCGATTTCCCGGCGCTCGCCGCCGACGAGTTCTACTGGGTCGATCTGATTGGCCTCGAC
GTGGTCAACGAGGCTGGCGTCGCGCTCGGCAAGGTTGCCGATATGATTGACAACGGCGTGCATTCGATCATGCGCGTCGA
ATATCCGGCGACCGGCAAGGATGGCCGGCCGACGACCGGCGAGCGGCTGATTCCGTTCGTCGGCGTGTACGTGAAGGCGG
TCGAGCAGGCGGCGGGACGCATCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
GTCGCCGACCGTCGAGCGTCTCGTGAAGCAGGCGCAAAAGGCGCAGCCGGCTGCCTAACATGGCGCGGCGTGCCGGAACT
GCCGGCTGTGAGGTTCGTTG

Downstream 100 bases:

>100_bases
AATGGACGAAGCCACGCAGCGCGCGATCCAGTTCGACGTCGTCACACTCTTTCCGGAGATGTTTCGTGCGTTGACCGACT
GGGGCATCACGAGCCGCGCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAGHDSGSAKRGRSPSFGVFVRKPVERAPTKGAGDGAADSEAIRIDAAQPWPDDAVEVGAVVDAYGLKGWVKLVAHAGAG
RGGDALLKARDWWLQKGGERKFARVTQAKLHSDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPALAADEFYWVDLIGLD
VVNEAGVALGKVADMIDNGVHSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVDWEADY

Sequences:

>Translated_229_residues
MAGHDSGSAKRGRSPSFGVFVRKPVERAPTKGAGDGAADSEAIRIDAAQPWPDDAVEVGAVVDAYGLKGWVKLVAHAGAG
RGGDALLKARDWWLQKGGERKFARVTQAKLHSDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPALAADEFYWVDLIGLD
VVNEAGVALGKVADMIDNGVHSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVDWEADY
>Mature_228_residues
AGHDSGSAKRGRSPSFGVFVRKPVERAPTKGAGDGAADSEAIRIDAAQPWPDDAVEVGAVVDAYGLKGWVKLVAHAGAGR
GGDALLKARDWWLQKGGERKFARVTQAKLHSDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPALAADEFYWVDLIGLDV
VNEAGVALGKVADMIDNGVHSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=29.5454545454545, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 24405; Mature: 24274

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHDSGSAKRGRSPSFGVFVRKPVERAPTKGAGDGAADSEAIRIDAAQPWPDDAVEVGA
CCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
VVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLHSDAVVAHPA
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCC
GSVDRDTALALRGFRVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKVADMIDNGV
CCCCCHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH
HSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVDWEADY
HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCC
>Mature Secondary Structure 
AGHDSGSAKRGRSPSFGVFVRKPVERAPTKGAGDGAADSEAIRIDAAQPWPDDAVEVGA
CCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
VVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLHSDAVVAHPA
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCC
GSVDRDTALALRGFRVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKVADMIDNGV
CCCCCHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH
HSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVDWEADY
HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA