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The map label for this gene is exbD1 [H]

Identifier: 83719115

GI number: 83719115

Start: 1355030

End: 1355566

Strand: Direct

Name: exbD1 [H]

Synonym: BTH_I1210

Alternate gene names: 83719115

Gene position: 1355030-1355566 (Clockwise)

Preceding gene: 83721248

Following gene: 83721013

Centisome position: 35.57

GC content: 72.81

Gene sequence:

>537_bases
ATGGCGTTCGGCGGACTCGATCACCAGCATACGTCGCAGCCGATGGCGGACATCAACATGACGCCGCTCATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCCTCACCGCGCCGCTCTTGACGCACGCGATCCGGCTCGATTTGCCGAAGGTCGCGG
CGGCGCCCGCGCGCGAGACGCCGGAGACGATCACGGTGTCGATCGACGCGGCGGGCAAGCTGTACTGGAACGACGCGCCC
GTCGCTCTCGATGCGCTCGCCGCGCGGCTGCGTGACGCGGCGGCAAACGGCAAGGACCCGGAGCTGCATCTGCGCGCCGC
GCGCGACACCCGCTACGACACGATCGCGCAGGTGATGGGCGCGGCGCAGCAGGCGGGCGTCGCGCGGATCGGCTTCGTCA
CCGACGCGTCGGGAAAGCCCGACGCGTCCGCGAAGCCGCCGGCGCGACCTTCGCCGCCGCGCGCCGCGCAACGCCCGCCG
CAGCCGCAGCCGCCGTCGCCGTCGCCGTCGCCGCCCGCGATACCCGCGCCGCGCTGA

Upstream 100 bases:

>100_bases
GTGTTCGTCTGCGGCGAGCCGGCCGCGGCCCCCGCCGACAACCCGGCCGCCGCGGCCTAGCCCGCGGCGTCGATCCGATA
CACGCAGCGAGGAGGGCGGC

Downstream 100 bases:

>100_bases
TCGTCGCCCGTGGCCGCGCCAACGGCCGTGCCGGCCGGCGCGGACGGTATAATCGACGTTTTCCCCGCGCCGCCCGCGGC
CGCCGGGGAAGCGCGACTTT

Product: biopolymer ExbD/TolR family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFILTAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VALDALAARLRDAAANGKDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDASGKPDASAKPPARPSPPRAAQRPP
QPQPPSPSPSPPAIPAPR

Sequences:

>Translated_178_residues
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFILTAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAP
VALDALAARLRDAAANGKDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDASGKPDASAKPPARPSPPRAAQRPP
QPQPPSPSPSPPAIPAPR
>Mature_177_residues
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFILTAPLLTHAIRLDLPKVAAAPARETPETITVSIDAAGKLYWNDAPV
ALDALAARLRDAAANGKDPELHLRAARDTRYDTIAQVMGAAQQAGVARIGFVTDASGKPDASAKPPARPSPPRAAQRPPQ
PQPPSPSPSPPAIPAPR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=125, Percent_Identity=34.4, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18715; Mature: 18584

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFILTAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVALDALAARLRDAAANGKDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDASGKPDASAKPPARPSPPRAAQRPPQPQPPSPSPSPPAIPAPR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDHQHTSQPMADINMTPLIDVMLVLLVIFILTAPLLTHAIRLDLPKVAAAPARET
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PETITVSIDAAGKLYWNDAPVALDALAARLRDAAANGKDPELHLRAARDTRYDTIAQVMG
CCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
AAQQAGVARIGFVTDASGKPDASAKPPARPSPPRAAQRPPQPQPPSPSPSPPAIPAPR
HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]