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The map label for this gene is yhbU [H]

Identifier: 83593860

GI number: 83593860

Start: 2939573

End: 2940577

Strand: Reverse

Name: yhbU [H]

Synonym: Rru_A2525

Alternate gene names: 83593860

Gene position: 2940577-2939573 (Counterclockwise)

Preceding gene: 83593861

Following gene: 83593859

Centisome position: 67.56

GC content: 65.47

Gene sequence:

>1005_bases
ATGGTTGAAACGCTGTGTCGTCCGGTTCGAGACGACTCCATCGAACTCGAATGCCCGGCGGGCACCCCCGCCGCCCTGGC
GGCGGCGATCGAGGCTGGGGCTGATTCCATTTACTTTGGCTTCCGCGACCGCACCAACGCCCGCAATTTCCCCGGCCTTA
ACTTCACCTTCGACGAAGCCGCCGAAGCGGTGGACGCCTGCCGCAAGGCCAACGTGAAGCCGTTGATCGCGCTCAACACC
TATGCCGATGCCGGCGACGAGGCGCTGTGGCGGCGCAATATCGATTTCGTCGCCACCCTCGATGTCGAGGCGGTGATCAT
CTGCGATATCGGCTTAATGGATTACGCGGCGAAGAAGCATCCCGATCTCGCCCTGCATCTGTCGGTCCAGGCCTCTGCCT
CCAACCCGGAAGCGGTGGCTTTTTATCGCGAGGCTTTCAATATCCGCCGCGTCGTGCTGCCGCGCGTGCTGTCGGTGGCC
GAGATCGCCAGCCTGACCGCCGAGATCGCCCCGGTCGAGGCCGAGGTTTTCGTCTTCGGCGGCCTGTGCGTGATGGCCGA
GGGCCGCTGCGCCCTGTCGTCCTATGCCACCGGCCTATCGCCCAACAAGGACGGCGTGTGTTCGCCGGCCAGCCATGTGC
GCTATGAGCAGGAAGGCGACGTGATGGTGTCGCGTCTGGGCGATTTCACCATCAACCGCTTCGAAGCCGGCGAGTCCGCG
GGCTATCCCACCCTGTGCAAGGGGCGGTTCTGTTCGCCGGCGCGCACCGGTCATCTGTTCGAGGATCCGACCAGCCTTGA
CGCCTCGGCCATCCTGCCCGATCTGCGGGCGGCGGGGGTCAAGGCCCTGAAGGTGGAAGGCCGCCAGCGCGGCAAGGCCT
ATGTCGCCCAGGTCATCCGCGCCTTGCGTCAGGCCCTTGACGGCGTCGATGCCGGGCTTGCCAAGAACAAGCTGATGGAA
GGTGGCGGCGCCACCGAAGGTGCCTACCGGCGCGACTGGCGATAA

Upstream 100 bases:

>100_bases
TTGCGCGGCGATCTGGCGCGGTTGACGGCCCGGGTGCAGCGCTTGGAGGCGGCGGGCCCGGCCCGGCGCCCGCGCGTCGT
CTCGAAGGGGGATATCGCCC

Downstream 100 bases:

>100_bases
GAAGGGTGGAAAGAATGACTCGCGTTGATATCGCGCTCGGGCCTTTGACCTATAACTGGCCCGCCGACAAGCGCCGCGCC
TTCTATGAAGACATCGCCAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MVETLCRPVRDDSIELECPAGTPAALAAAIEAGADSIYFGFRDRTNARNFPGLNFTFDEAAEAVDACRKANVKPLIALNT
YADAGDEALWRRNIDFVATLDVEAVIICDIGLMDYAAKKHPDLALHLSVQASASNPEAVAFYREAFNIRRVVLPRVLSVA
EIASLTAEIAPVEAEVFVFGGLCVMAEGRCALSSYATGLSPNKDGVCSPASHVRYEQEGDVMVSRLGDFTINRFEAGESA
GYPTLCKGRFCSPARTGHLFEDPTSLDASAILPDLRAAGVKALKVEGRQRGKAYVAQVIRALRQALDGVDAGLAKNKLME
GGGATEGAYRRDWR

Sequences:

>Translated_334_residues
MVETLCRPVRDDSIELECPAGTPAALAAAIEAGADSIYFGFRDRTNARNFPGLNFTFDEAAEAVDACRKANVKPLIALNT
YADAGDEALWRRNIDFVATLDVEAVIICDIGLMDYAAKKHPDLALHLSVQASASNPEAVAFYREAFNIRRVVLPRVLSVA
EIASLTAEIAPVEAEVFVFGGLCVMAEGRCALSSYATGLSPNKDGVCSPASHVRYEQEGDVMVSRLGDFTINRFEAGESA
GYPTLCKGRFCSPARTGHLFEDPTSLDASAILPDLRAAGVKALKVEGRQRGKAYVAQVIRALRQALDGVDAGLAKNKLME
GGGATEGAYRRDWR
>Mature_334_residues
MVETLCRPVRDDSIELECPAGTPAALAAAIEAGADSIYFGFRDRTNARNFPGLNFTFDEAAEAVDACRKANVKPLIALNT
YADAGDEALWRRNIDFVATLDVEAVIICDIGLMDYAAKKHPDLALHLSVQASASNPEAVAFYREAFNIRRVVLPRVLSVA
EIASLTAEIAPVEAEVFVFGGLCVMAEGRCALSSYATGLSPNKDGVCSPASHVRYEQEGDVMVSRLGDFTINRFEAGESA
GYPTLCKGRFCSPARTGHLFEDPTSLDASAILPDLRAAGVKALKVEGRQRGKAYVAQVIRALRQALDGVDAGLAKNKLME
GGGATEGAYRRDWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=332, Percent_Identity=47.289156626506, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI1788397, Length=346, Percent_Identity=30.635838150289, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI87081910, Length=304, Percent_Identity=27.9605263157895, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 35866; Mature: 35866

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVETLCRPVRDDSIELECPAGTPAALAAAIEAGADSIYFGFRDRTNARNFPGLNFTFDEA
CCHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AEAVDACRKANVKPLIALNTYADAGDEALWRRNIDFVATLDVEAVIICDIGLMDYAAKKH
HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHCC
PDLALHLSVQASASNPEAVAFYREAFNIRRVVLPRVLSVAEIASLTAEIAPVEAEVFVFG
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
GLCVMAEGRCALSSYATGLSPNKDGVCSPASHVRYEQEGDVMVSRLGDFTINRFEAGESA
CEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCCCEEEHCCCCCCC
GYPTLCKGRFCSPARTGHLFEDPTSLDASAILPDLRAAGVKALKVEGRQRGKAYVAQVIR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCEEEEEECCHHCCHHHHHHHHH
ALRQALDGVDAGLAKNKLMEGGGATEGAYRRDWR
HHHHHHCCHHCCHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVETLCRPVRDDSIELECPAGTPAALAAAIEAGADSIYFGFRDRTNARNFPGLNFTFDEA
CCHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AEAVDACRKANVKPLIALNTYADAGDEALWRRNIDFVATLDVEAVIICDIGLMDYAAKKH
HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHCC
PDLALHLSVQASASNPEAVAFYREAFNIRRVVLPRVLSVAEIASLTAEIAPVEAEVFVFG
CCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
GLCVMAEGRCALSSYATGLSPNKDGVCSPASHVRYEQEGDVMVSRLGDFTINRFEAGESA
CEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCCCEEEHCCCCCCC
GYPTLCKGRFCSPARTGHLFEDPTSLDASAILPDLRAAGVKALKVEGRQRGKAYVAQVIR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCEEEEEECCHHCCHHHHHHHHH
ALRQALDGVDAGLAKNKLMEGGGATEGAYRRDWR
HHHHHHCCHHCCHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]