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The map label for this gene is yqxC [H]

Identifier: 83590353

GI number: 83590353

Start: 1554979

End: 1555794

Strand: Reverse

Name: yqxC [H]

Synonym: Moth_1510

Alternate gene names: 83590353

Gene position: 1555794-1554979 (Counterclockwise)

Preceding gene: 83590354

Following gene: 83590352

Centisome position: 59.18

GC content: 60.29

Gene sequence:

>816_bases
GTGGCTAAGGAACGATTGGACCTCCTGCTGGTGAGGCGGGGCCTCTACCCCAGCAGGGAACAGGCCCGGACGGCCATCAT
GGCCGGCGAGGTCCTGGTTAACGATGTTCCAGTCGATAAGCCAGGCGCTGCCGTGCCGGATACAGCGACCATCCGTCTCC
TTGGCCAGCACCTCCCTTACGTCAGCCGGGGAGGGTTAAAGCTCGCCCGGGCCCTGGAGGTCTTTAGTATCGATCTGCAT
GGTAAAATAATCCTGGACGTCGGCGCTTCTACCGGCGGCTTTACCGACTGCGCCCTCAAGCACGGTGCCGCCCGCGTTTA
TGCCGTCGATGTGGGTTACGGACAACTGGCCTGGTCCCTGCGCCAGGACCCAAGGGTTATAGTAATGGAAAGGGTCAACG
CCCGTTACCTGGAGTCTTCCAGTTTTGGCGAACCGGCAGACGTGGCAACTATTGATGTTTCCTTCATATCTTTGCTCAAG
GTCCTGCCCGCTGTGGCCAGTTGCCTGAAACCGGAGGGGGAAATAATCGCCCTGGTAAAACCCCAGTTTGAAGCCGGGCC
CGGCCGGGTCGGTAAAAAGGGTGTGGTACGGGAGGCAGCCGTCCACCGGGCGGTATTACAGGAAGTACTGGCTGCTGCGG
TTGACCTGGGCTTGAAAATCAAGGGCCTTACCTACTCGCCCATCAAGGGGCCGGAGGGTAACGTGGAATTCCTCCTCTGG
CTGGGTTTAACCGGCCAGGGCCTGGAGAAGGAGGCCTGGGAGAGCCTCATCAACCGGGTAGTTGCTGCGGCCCACGAGGG
ACTGTTGAAGCCGTAG

Upstream 100 bases:

>100_bases
TTAGGCTTGACTCCGGCCGGGATCAGGGCTGCCGTCCAGGCGCTGCTGGCGGAGACCCCGGTCCTGCACCGGCGGCGCAA
CCAGACAAAGGGGATTTCCG

Downstream 100 bases:

>100_bases
TTTCATAGCGGGGGAGATAACCCCGCCGGGGAAATGAGGGATTGCATTGCAGCGGATAGGTATGGTGGCCAACCTGGAAA
AACCCCGGGTACGAGAAACG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAKERLDLLLVRRGLYPSREQARTAIMAGEVLVNDVPVDKPGAAVPDTATIRLLGQHLPYVSRGGLKLARALEVFSIDLH
GKIILDVGASTGGFTDCALKHGAARVYAVDVGYGQLAWSLRQDPRVIVMERVNARYLESSSFGEPADVATIDVSFISLLK
VLPAVASCLKPEGEIIALVKPQFEAGPGRVGKKGVVREAAVHRAVLQEVLAAAVDLGLKIKGLTYSPIKGPEGNVEFLLW
LGLTGQGLEKEAWESLINRVVAAAHEGLLKP

Sequences:

>Translated_271_residues
MAKERLDLLLVRRGLYPSREQARTAIMAGEVLVNDVPVDKPGAAVPDTATIRLLGQHLPYVSRGGLKLARALEVFSIDLH
GKIILDVGASTGGFTDCALKHGAARVYAVDVGYGQLAWSLRQDPRVIVMERVNARYLESSSFGEPADVATIDVSFISLLK
VLPAVASCLKPEGEIIALVKPQFEAGPGRVGKKGVVREAAVHRAVLQEVLAAAVDLGLKIKGLTYSPIKGPEGNVEFLLW
LGLTGQGLEKEAWESLINRVVAAAHEGLLKP
>Mature_270_residues
AKERLDLLLVRRGLYPSREQARTAIMAGEVLVNDVPVDKPGAAVPDTATIRLLGQHLPYVSRGGLKLARALEVFSIDLHG
KIILDVGASTGGFTDCALKHGAARVYAVDVGYGQLAWSLRQDPRVIVMERVNARYLESSSFGEPADVATIDVSFISLLKV
LPAVASCLKPEGEIIALVKPQFEAGPGRVGKKGVVREAAVHRAVLQEVLAAAVDLGLKIKGLTYSPIKGPEGNVEFLLWL
GLTGQGLEKEAWESLINRVVAAAHEGLLKP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28995; Mature: 28864

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERLDLLLVRRGLYPSREQARTAIMAGEVLVNDVPVDKPGAAVPDTATIRLLGQHLPY
CCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHEEECCCCCCCCCCCCCHHHHHHHHHHCCC
VSRGGLKLARALEVFSIDLHGKIILDVGASTGGFTDCALKHGAARVYAVDVGYGQLAWSL
HHCCCHHHHHHHHHEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHH
RQDPRVIVMERVNARYLESSSFGEPADVATIDVSFISLLKVLPAVASCLKPEGEIIALVK
CCCCCEEEEECCCHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGPGRVGKKGVVREAAVHRAVLQEVLAAAVDLGLKIKGLTYSPIKGPEGNVEFLLW
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEECCCCCCCCCEEEEEE
LGLTGQGLEKEAWESLINRVVAAAHEGLLKP
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKERLDLLLVRRGLYPSREQARTAIMAGEVLVNDVPVDKPGAAVPDTATIRLLGQHLPY
CHHHHHHHHHHHCCCCCHHHHHHHHHHCHHEEECCCCCCCCCCCCCHHHHHHHHHHCCC
VSRGGLKLARALEVFSIDLHGKIILDVGASTGGFTDCALKHGAARVYAVDVGYGQLAWSL
HHCCCHHHHHHHHHEEEECCCEEEEEECCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHH
RQDPRVIVMERVNARYLESSSFGEPADVATIDVSFISLLKVLPAVASCLKPEGEIIALVK
CCCCCEEEEECCCHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGPGRVGKKGVVREAAVHRAVLQEVLAAAVDLGLKIKGLTYSPIKGPEGNVEFLLW
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEECCCCCCCCCEEEEEE
LGLTGQGLEKEAWESLINRVVAAAHEGLLKP
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]