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The map label for this gene is yoeC [H]

Identifier: 82750325

GI number: 82750325

Start: 636378

End: 636938

Strand: Direct

Name: yoeC [H]

Synonym: SAB0572

Alternate gene names: 82750325

Gene position: 636378-636938 (Clockwise)

Preceding gene: 82750322

Following gene: 82750326

Centisome position: 23.2

GC content: 30.12

Gene sequence:

>561_bases
ATGAATAAAGTAGAAGTGATTAAATTTAATGATGATATTGTTAAAATGTATGAAGCGCTCAAGATAAAATCTGAACGTGA
CTATTTATTCTTTAAGTTAGCTATACATAGTGGATTGAAAGTATCAGAATTATTAACAATTACAGTCTCTCAAGTTAAGA
GACTAATTGAAAAGTGTACGTTATCAGAAATGCGTAAAGCACATTTTCATTCGTTGATTAAAATTAAATTACCAGAAACA
TTATCGAAAGAACTACTTCAATATATAGAGGACAGGAGTCTTTCGAATGAAGACGTTCTTTTTCAATCACTACGAACAAA
TCAAGTATTATCTAGACAGCAAGCATACCGAATTATTCATCAAGCATCAATTGAAGCTGGCATAGAGAATGTAGGACTAA
CGACATTGCGTAAGACATTTGCATATCATGCTTATCAAAAAGGTATACCTATACCAGTCATTCAAAAGTATTTAGGGCAT
CAATCTGCTATTGAAACACTAAATTTTATCGGTTTAGAAAATGAGTGTGAACATAGTATTTATATTTCATTACAATTATA
G

Upstream 100 bases:

>100_bases
ATTTTCTATGTTTAAAATCTATAAAAAAGGTAATAGATATATGTAACTAAAATATAAAATAGCTATGATTAAGACACTTG
AAGTAAGAGGAGGTTGAGGA

Downstream 100 bases:

>100_bases
AAACAAAGGAGGCTAATAATGAGTTTGGTTTATTTATTAATTGCCATACTTGTGATTATGGCGATGATACTTCTAATGTC
TAAACGTAGAGCATTGGCTA

Product: phage recombinase/integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNKVEVIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCTLSEMRKAHFHSLIKIKLPET
LSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIHQASIEAGIENVGLTTLRKTFAYHAYQKGIPIPVIQKYLGH
QSAIETLNFIGLENECEHSIYISLQL

Sequences:

>Translated_186_residues
MNKVEVIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCTLSEMRKAHFHSLIKIKLPET
LSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIHQASIEAGIENVGLTTLRKTFAYHAYQKGIPIPVIQKYLGH
QSAIETLNFIGLENECEHSIYISLQL
>Mature_186_residues
MNKVEVIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCTLSEMRKAHFHSLIKIKLPET
LSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIHQASIEAGIENVGLTTLRKTFAYHAYQKGIPIPVIQKYLGH
QSAIETLNFIGLENECEHSIYISLQL

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21523; Mature: 21523

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVEVIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
CCCEEEEEECHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHH
LSEMRKAHFHSLIKIKLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
HHHHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QASIEAGIENVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
HHHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEE
YISLQL
EEEEEC
>Mature Secondary Structure
MNKVEVIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
CCCEEEEEECHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHH
LSEMRKAHFHSLIKIKLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
HHHHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QASIEAGIENVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
HHHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEE
YISLQL
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]