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The map label for this gene is ypjD [H]

Identifier: 82703252

GI number: 82703252

Start: 2427207

End: 2428034

Strand: Reverse

Name: ypjD [H]

Synonym: Nmul_A2133

Alternate gene names: 82703252

Gene position: 2428034-2427207 (Counterclockwise)

Preceding gene: 82703254

Following gene: 82703251

Centisome position: 76.25

GC content: 56.76

Gene sequence:

>828_bases
ATGTCCGATATTTTAGCCTATCTCGCTGCCTTCCTGCTCTATGCACTGATCGGCTGGCACTTCTGGCGCACCCGGTGGAA
TGTTCCTGCGAGGTCAGGAGGAGGCGAGGCTGCCGGTGCGGGATGGGAACGGTATGCCATTGTCGCGCCCCTGGTATTGC
ATGGCTATACGCTGTATGAAGCGGTGTTTGCAGGGGTAGGATTGAATTTCGGCGTGGGCAGCGCGGTTTCTTCCATTGTA
TGGCTCACGGCCATGATTTACTGGTTATCCGGATTTTTTTATCGGCTGGAGGGGCTGCAAACACTGGTCGCGCCAGTTGC
AGCCGTGGCCGTACTGCTGCCGCTGGCATTTCCCTCCCTGCGCCCCCTGGCCAATACCGAATTTCCCGCTTTTAAGGCGC
ATATCTCGATTGCCATGCTGGCTTACAGCCTGTTGACCATTGCCGCACTGCATGCGTTGCTCATGGCAGTGGTGGAGCGG
CGGTTGCATCACCCGACCTTGCCCTCGGTACTGACCAATATGCCGCCGCTGCTGACCATGGAAAACCTGCTGTTTCGCGT
CATCTGGGTGGGGTTCATACTACTCACGCTCACACTCATCAGCGGTATCGTCTTTTCAGAAGAGGTCTTCGGGCAACCTC
TCAAATTCACGCATAAAACCCTGTTCGGTATCATTTCATGGTGCGTGTTCGCAGCACTGCTGGCGGGCAGGCAGTTTTAC
GGCTGGCGCGGGCGCATCGCCATTCGCTGGACGCTGAGCGGATTCACCATCCTCCTGCTGGCTTATCTCGGCAGCAAGTT
TGTACTGGAAGTGATCCTGCATCGCTAG

Upstream 100 bases:

>100_bases
GCCGGTTGGTAAGATTGTCAAACATGCAAAATGCCTCTCCGGAAAAATTGGTGTAGACTAAATGAAGGTTTCATTTAGTT
TCATTTAATCTGCAATATCA

Downstream 100 bases:

>100_bases
CAGTATCTATGTGTCAGAAAACAGTTGGGGTGGAAAAAGTGCAAGGAAATCCGGGGATGGAATCTCCAGTTATTCTGCCT
TCTTTCCGCCCTGAATTTTT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSDILAYLAAFLLYALIGWHFWRTRWNVPARSGGGEAAGAGWERYAIVAPLVLHGYTLYEAVFAGVGLNFGVGSAVSSIV
WLTAMIYWLSGFFYRLEGLQTLVAPVAAVAVLLPLAFPSLRPLANTEFPAFKAHISIAMLAYSLLTIAALHALLMAVVER
RLHHPTLPSVLTNMPPLLTMENLLFRVIWVGFILLTLTLISGIVFSEEVFGQPLKFTHKTLFGIISWCVFAALLAGRQFY
GWRGRIAIRWTLSGFTILLLAYLGSKFVLEVILHR

Sequences:

>Translated_275_residues
MSDILAYLAAFLLYALIGWHFWRTRWNVPARSGGGEAAGAGWERYAIVAPLVLHGYTLYEAVFAGVGLNFGVGSAVSSIV
WLTAMIYWLSGFFYRLEGLQTLVAPVAAVAVLLPLAFPSLRPLANTEFPAFKAHISIAMLAYSLLTIAALHALLMAVVER
RLHHPTLPSVLTNMPPLLTMENLLFRVIWVGFILLTLTLISGIVFSEEVFGQPLKFTHKTLFGIISWCVFAALLAGRQFY
GWRGRIAIRWTLSGFTILLLAYLGSKFVLEVILHR
>Mature_274_residues
SDILAYLAAFLLYALIGWHFWRTRWNVPARSGGGEAAGAGWERYAIVAPLVLHGYTLYEAVFAGVGLNFGVGSAVSSIVW
LTAMIYWLSGFFYRLEGLQTLVAPVAAVAVLLPLAFPSLRPLANTEFPAFKAHISIAMLAYSLLTIAALHALLMAVVERR
LHHPTLPSVLTNMPPLLTMENLLFRVIWVGFILLTLTLISGIVFSEEVFGQPLKFTHKTLFGIISWCVFAALLAGRQFYG
WRGRIAIRWTLSGFTILLLAYLGSKFVLEVILHR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=249, Percent_Identity=31.7269076305221, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30482; Mature: 30351

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDILAYLAAFLLYALIGWHFWRTRWNVPARSGGGEAAGAGWERYAIVAPLVLHGYTLYE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AVFAGVGLNFGVGSAVSSIVWLTAMIYWLSGFFYRLEGLQTLVAPVAAVAVLLPLAFPSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RPLANTEFPAFKAHISIAMLAYSLLTIAALHALLMAVVERRLHHPTLPSVLTNMPPLLTM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHH
ENLLFRVIWVGFILLTLTLISGIVFSEEVFGQPLKFTHKTLFGIISWCVFAALLAGRQFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHC
GWRGRIAIRWTLSGFTILLLAYLGSKFVLEVILHR
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]