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The map label for this gene is xerC [H]

Identifier: 82703133

GI number: 82703133

Start: 2310763

End: 2311752

Strand: Reverse

Name: xerC [H]

Synonym: Nmul_A2012

Alternate gene names: 82703133

Gene position: 2311752-2310763 (Counterclockwise)

Preceding gene: 82703134

Following gene: 82703132

Centisome position: 72.6

GC content: 60.71

Gene sequence:

>990_bases
ATGAGTGAAGAACTGATGATTTCCCCCGCCGCCCCGGCTGCGCCTGCCGCCGGCAGTGCCCTGACCTCCGCCCAATTTCG
CAAACTTGCGGAAGTTCCACCCGAGATCGAATGGTTCGCCAACATCGACAGCCTGCAGACCCGACGCGCGTACCAGAACG
ATTTGCGCGGCTTCATGGCTTTTGCCGGCATCGTCAGCCCGGAGGATTTTCGGCTCATTACCCGCAGCCATGTGCTCGCC
TGGAGGAAGCGCCTGGAAGAAGAGCAGCTGGGCGGTGCCACCATCCGCAGGAAACTGGCGGCCCTCTCCTCCCTGTTCGA
GTACCTATGCGAAGCCAATGCGGTCACGCACAATCCGGTCAAAGGCGTGAAGCGCCCCCCGGTAGAATCCTGGCAGGGCA
AGACGCCGGCATTGGGGGACGTCCAGGCGCGCGCCCTGCTCGAGGCTCCCAATGCCAAGACACTCAAGGGCAAGCGCGAC
CGGGCGATTCTCTCCGCCCTGCTCTATCACGGCATCCGCCGCGAAGAATTGGCCCGCCTCAAGGTGAAAGACTACAACCA
GTCGCGCCGCGGAGTGCCGCATCTGCGCATCAAGGGCAAGGGCGGCAAGATGCGCTTCATTCCCACCCACCCCGGCACAC
TGACCCTGATCGAAGAGTATCTGGAGGCCGCGGGCCATGGACACGATCCCGATGCGCCCTTGTTTAGGCCAGTCAAAAAC
AATGTGCACGGTCATACCCTGACGGCCCTCACGCCCGATTCCATCTATTTCGAGGTGGTACTGAAGTATTTAAGGAAATT
GGGGATTTTTGGGGAAAACATGGGGCCACATGTCATGCGCGCCACGGCCGCAACCAATGCACTGGACAACGGGGCAGACA
TCGCCAAGGTGCAGGAGTGGCTCGGGCATGCGAATATCGCCACGACCCGGATCTATGATCATCGCAAGACCCGGCCCGAG
GATAGCCCCACGTTTAAGGTTAGTTATTAG

Upstream 100 bases:

>100_bases
TCCCCATGATCGTCGCCTGGTATTGGTTATTTGTGTTGAAAAAGGGTTATCCACATGATCAACATAGATATAGCCGTACT
TCCCCCCAGGATAAATTGGC

Downstream 100 bases:

>100_bases
AAACGCCCGTATACCCAAGTGGTTCTCACGTAAAACCAACCACCTTGGAAATATCTCTTTGCGCTTGTAATTCACGAATG
ACTTCTTGAAAACAGTCTGA

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSEELMISPAAPAAPAAGSALTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLA
WRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRD
RAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKN
NVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTRPE
DSPTFKVSY

Sequences:

>Translated_329_residues
MSEELMISPAAPAAPAAGSALTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLA
WRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRD
RAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKN
NVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTRPE
DSPTFKVSY
>Mature_328_residues
SEELMISPAAPAAPAAGSALTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLAW
RKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRDR
AILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKNN
VHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTRPED
SPTFKVSY

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=229, Percent_Identity=32.3144104803493, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790244, Length=267, Percent_Identity=29.5880149812734, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36592; Mature: 36461

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEELMISPAAPAAPAAGSALTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMA
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHH
FAGIVSPEDFRLITRSHVLAWRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRDRAILSALLYHGIRREELARL
CCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
KVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKN
HHHCCCCHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC
NVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEW
CCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LGHANIATTRIYDHRKTRPEDSPTFKVSY
HCCCCHHEEEEHHCCCCCCCCCCCEEECC
>Mature Secondary Structure 
SEELMISPAAPAAPAAGSALTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMA
CCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHH
FAGIVSPEDFRLITRSHVLAWRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRDRAILSALLYHGIRREELARL
CCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
KVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKN
HHHCCCCHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC
NVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEW
CCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LGHANIATTRIYDHRKTRPEDSPTFKVSY
HCCCCHHEEEEHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA