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The map label for this gene is yciR [C]

Identifier: 82702981

GI number: 82702981

Start: 2145020

End: 2145958

Strand: Direct

Name: yciR [C]

Synonym: Nmul_A1860

Alternate gene names: 82702981

Gene position: 2145020-2145958 (Clockwise)

Preceding gene: 82702975

Following gene: 82702982

Centisome position: 67.36

GC content: 50.48

Gene sequence:

>939_bases
ATGATTACCGAAGCTGATATTCATGCGGCAAGGATTCTGATTGTTGATGATCAGGAAACAAATGTCCAGTTGCTGGAAAG
CATGCTAGCCGCTGCAAGCTACACGTCTGTCACTTCGACGACCGATCCGTTCAAGGTGTATGAGTTGCATCGGCAAAACC
ACTACGATCTGATTTTGCTCGATTTGAAAATGGCCGGCATGGATGGGTTTCAGGTACTCGAAGCCTTGAAAGAAATCGAG
GCAGATGGATATCTACCTGTACTGGTCGTCACCGCCAACCCCGATTCCAAGCTACGGGCGCTTCAGTCCGGCGCCAAGGA
TTTTGTCAGCAAGCCTTTTGACATGAGTGAAGTACTCGCGCGCGTGCATAATCTGCTCGAAGTGCGACTGCTACATCAGC
AAGCGCGCCATTACGCAAAGTCGCAAGAATTCATGGCACTGCATGATCCGCTGACGGGACTGGCCAACAGACGGCTTCTG
GTGGAAAGAGTATCTCAGGCTATCATCCATGCAAAGCGCAACAATAGCGTTATGGGAGTCTTGTATCTGGATCTGGATGG
GTTCAGGCAAATCAACAACACATTGGGTCACGATATAGGCGATCTGCTTTTGAAGCTGGTCGCGGCGCGCCTGATTGCCG
CAGTTCGCCAGGAAGATACCGTGGCTCGGCTCGGCGGCGATGAGTTTGTGATTTCGATGCCGCATGTAAGCAATCTCGAT
GGCATAAGCCGTACAGCGGAAAAAGTAATAAAAGCACTGTCGCAACCTTACAGCATTCAGGGAAATGCCATCACCCTCAC
TGCAAGCGCGGGTGTCGGGATTTTTCCTGATAATGGCAAAGATGCGAAAACCCTTTTGAAGAATGCGGATGCTGCCCTGC
TGGAGGCAAAGCAGGCGAACAAAAATACTTATCGAATTTCAGAACGAGTAAGCGCCTAG

Upstream 100 bases:

>100_bases
GCCCTCAGCCGTTTATGCTCGGATAAGCAGAAAGGGGACAGGCCGCCCGAAGGTTAAAGGGTTTAGAAAGGCGATAAGTC
CTTATGAAGATGTGGGCAAC

Downstream 100 bases:

>100_bases
CGTTCAGCTCCGTTTCGCCATTATTGCCGTGTCGCTGCAAATTTCCCATATTTTGCTGAAATCAGGATATTTATCGGAAA
ACAACGTTCTTTTTCTGAGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MITEADIHAARILIVDDQETNVQLLESMLAAASYTSVTSTTDPFKVYELHRQNHYDLILLDLKMAGMDGFQVLEALKEIE
ADGYLPVLVVTANPDSKLRALQSGAKDFVSKPFDMSEVLARVHNLLEVRLLHQQARHYAKSQEFMALHDPLTGLANRRLL
VERVSQAIIHAKRNNSVMGVLYLDLDGFRQINNTLGHDIGDLLLKLVAARLIAAVRQEDTVARLGGDEFVISMPHVSNLD
GISRTAEKVIKALSQPYSIQGNAITLTASAGVGIFPDNGKDAKTLLKNADAALLEAKQANKNTYRISERVSA

Sequences:

>Translated_312_residues
MITEADIHAARILIVDDQETNVQLLESMLAAASYTSVTSTTDPFKVYELHRQNHYDLILLDLKMAGMDGFQVLEALKEIE
ADGYLPVLVVTANPDSKLRALQSGAKDFVSKPFDMSEVLARVHNLLEVRLLHQQARHYAKSQEFMALHDPLTGLANRRLL
VERVSQAIIHAKRNNSVMGVLYLDLDGFRQINNTLGHDIGDLLLKLVAARLIAAVRQEDTVARLGGDEFVISMPHVSNLD
GISRTAEKVIKALSQPYSIQGNAITLTASAGVGIFPDNGKDAKTLLKNADAALLEAKQANKNTYRISERVSA
>Mature_312_residues
MITEADIHAARILIVDDQETNVQLLESMLAAASYTSVTSTTDPFKVYELHRQNHYDLILLDLKMAGMDGFQVLEALKEIE
ADGYLPVLVVTANPDSKLRALQSGAKDFVSKPFDMSEVLARVHNLLEVRLLHQQARHYAKSQEFMALHDPLTGLANRRLL
VERVSQAIIHAKRNNSVMGVLYLDLDGFRQINNTLGHDIGDLLLKLVAARLIAAVRQEDTVARLGGDEFVISMPHVSNLD
GISRTAEKVIKALSQPYSIQGNAITLTASAGVGIFPDNGKDAKTLLKNADAALLEAKQANKNTYRISERVSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=30.8641975308642, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=37.5796178343949, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=30.0546448087432, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786584, Length=204, Percent_Identity=30.3921568627451, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=32.5714285714286, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=32.1212121212121, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=32.9113924050633, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=32.6923076923077, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081881, Length=238, Percent_Identity=29.8319327731092, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082012, Length=115, Percent_Identity=34.7826086956522, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788394, Length=124, Percent_Identity=40.3225806451613, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=95, Percent_Identity=36.8421052631579, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790299, Length=128, Percent_Identity=33.59375, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788550, Length=127, Percent_Identity=28.3464566929134, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786784, Length=118, Percent_Identity=31.3559322033898, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=33.8983050847458, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 34320; Mature: 34320

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF ; PS00214 FABP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITEADIHAARILIVDDQETNVQLLESMLAAASYTSVTSTTDPFKVYELHRQNHYDLILL
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEE
DLKMAGMDGFQVLEALKEIEADGYLPVLVVTANPDSKLRALQSGAKDFVSKPFDMSEVLA
EEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RVHNLLEVRLLHQQARHYAKSQEFMALHDPLTGLANRRLLVERVSQAIIHAKRNNSVMGV
HHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LYLDLDGFRQINNTLGHDIGDLLLKLVAARLIAAVRQEDTVARLGGDEFVISMPHVSNLD
EEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCC
GISRTAEKVIKALSQPYSIQGNAITLTASAGVGIFPDNGKDAKTLLKNADAALLEAKQAN
HHHHHHHHHHHHHCCCCEECCCEEEEEECCCCEECCCCCCHHHHHHHCCCHHHHHHHHCC
KNTYRISERVSA
CCCEEHHHHCCC
>Mature Secondary Structure
MITEADIHAARILIVDDQETNVQLLESMLAAASYTSVTSTTDPFKVYELHRQNHYDLILL
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEE
DLKMAGMDGFQVLEALKEIEADGYLPVLVVTANPDSKLRALQSGAKDFVSKPFDMSEVLA
EEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RVHNLLEVRLLHQQARHYAKSQEFMALHDPLTGLANRRLLVERVSQAIIHAKRNNSVMGV
HHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LYLDLDGFRQINNTLGHDIGDLLLKLVAARLIAAVRQEDTVARLGGDEFVISMPHVSNLD
EEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCC
GISRTAEKVIKALSQPYSIQGNAITLTASAGVGIFPDNGKDAKTLLKNADAALLEAKQAN
HHHHHHHHHHHHHCCCCEECCCEEEEEECCCCEECCCCCCHHHHHHHCCCHHHHHHHHCC
KNTYRISERVSA
CCCEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]