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The map label for this gene is yagA [C]

Identifier: 82702817

GI number: 82702817

Start: 1933205

End: 1933708

Strand: Reverse

Name: yagA [C]

Synonym: Nmul_A1693

Alternate gene names: 82702817

Gene position: 1933708-1933205 (Counterclockwise)

Preceding gene: 82702824

Following gene: 82702816

Centisome position: 60.73

GC content: 56.15

Gene sequence:

>504_bases
GTGGTGGACAACTATACGCGGGAGAGCCTAGCCATCGAGGTGGGCCAGAGCCTGAAAGGAGAGGATGTCGTGAAGACGCT
CAACCACATTGCGACCAGACGCGGCTTGCCCAGCATTATCAAAGTCGACAATGGCAGTGAATTCATCTCCAGGGTCATGG
ACAAATGGGCCTATGAGCGTGGCATCGAACTTGACTTCAGCCGTCCAGGCAAGCCCACCGACAACGCCAGGGTGGAAAGC
TTCAACGGACGGTTCCGGCAGGAGTGTCTCAACGCCCACTGGTTCTTGTCTTTAGAGGATGCCAGGCGCAAGATTGATGA
GTGGCGGCAGTACTATAATGAGATGCGTCCCCACTCTGCATTGCAGTGGGCAACGCCCGCTGAATTCGCCCGCCGGGCAA
GGGAAAACGCCTTGCCCGACAGGCCTACGGAGCCGGAATTTTCCACTTTAGACCGGGGCGCATTCAACCGGTCAGTGCAA
CACCTATTGATTCTTGATTTGTAG

Upstream 100 bases:

>100_bases
GCTTCTTCTTCATGGCAAACACCCCTCCTTTCAAGGTCAAGTTTGCCGAAAAACTCACTTTCTGTCTGGTCCTGAATTCC
TAAAGCAGATCACTCTGACC

Downstream 100 bases:

>100_bases
AGGTGTGCAATGGCTAGCGTATATGGTGGCATGACTGATGAACGCAAAGCGTGTATTTGGCGGTTATGGCAGCAAGGGGT
TGCTATGAGTGTAATTGCTA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MVDNYTRESLAIEVGQSLKGEDVVKTLNHIATRRGLPSIIKVDNGSEFISRVMDKWAYERGIELDFSRPGKPTDNARVES
FNGRFRQECLNAHWFLSLEDARRKIDEWRQYYNEMRPHSALQWATPAEFARRARENALPDRPTEPEFSTLDRGAFNRSVQ
HLLILDL

Sequences:

>Translated_167_residues
MVDNYTRESLAIEVGQSLKGEDVVKTLNHIATRRGLPSIIKVDNGSEFISRVMDKWAYERGIELDFSRPGKPTDNARVES
FNGRFRQECLNAHWFLSLEDARRKIDEWRQYYNEMRPHSALQWATPAEFARRARENALPDRPTEPEFSTLDRGAFNRSVQ
HLLILDL
>Mature_167_residues
MVDNYTRESLAIEVGQSLKGEDVVKTLNHIATRRGLPSIIKVDNGSEFISRVMDKWAYERGIELDFSRPGKPTDNARVES
FNGRFRQECLNAHWFLSLEDARRKIDEWRQYYNEMRPHSALQWATPAEFARRARENALPDRPTEPEFSTLDRGAFNRSVQ
HLLILDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=165, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 19464; Mature: 19464

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNYTRESLAIEVGQSLKGEDVVKTLNHIATRRGLPSIIKVDNGSEFISRVMDKWAYER
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC
GIELDFSRPGKPTDNARVESFNGRFRQECLNAHWFLSLEDARRKIDEWRQYYNEMRPHSA
CCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCH
LQWATPAEFARRARENALPDRPTEPEFSTLDRGAFNRSVQHLLILDL
HCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MVDNYTRESLAIEVGQSLKGEDVVKTLNHIATRRGLPSIIKVDNGSEFISRVMDKWAYER
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC
GIELDFSRPGKPTDNARVESFNGRFRQECLNAHWFLSLEDARRKIDEWRQYYNEMRPHSA
CCCCCCCCCCCCCCCCHHHHHCCHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCH
LQWATPAEFARRARENALPDRPTEPEFSTLDRGAFNRSVQHLLILDL
HCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]