Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is insG [H]
Identifier: 82546112
GI number: 82546112
Start: 3778761
End: 3779351
Strand: Reverse
Name: insG [H]
Synonym: SBO_3760
Alternate gene names: 82546112
Gene position: 3779351-3778761 (Counterclockwise)
Preceding gene: 82546118
Following gene: 82546111
Centisome position: 83.62
GC content: 57.36
Gene sequence:
>591_bases TTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTGGTATCCCGTTACGATTCTCTGCGTAACCCACTGAC TTCTCTGGGGGATTACCTCGACCCCGAACTCATCTCTCGTTGCCTTGCCGAATCAGGTACTGTAACGCTACGCAAGCGCC GTCTTCCCCTCGAAATGATGGTCTGGTGTATTGTTGGCATGGCGCTTGAGCGTAAAGAACCTCTTCACCAGATTGTGAAT CGCCTGGACATCATGCTGCCGGGCAATCGCCCCTTCGTTGCCCCCAGTGCCGTTATTCAGGCCCGCCAGCGCCTGGGAAG TGAGGCTGTCCGCCGCGTGTTCACGAAAACAGCGCAGCTCTGGCATAACGCCACGCCGCATCCGCACTGGTGCGGCCTGA CCCTGCTGGCCATCGATGGTGTGTTCTGGCGCACACCGGATACACCAGAGAACGATGCAGCCTTCCCCCGCCAGACACAT GCCGGGAACCCGGCGCTCTACCCGCAGGTCAAAATGGTCTGCCAGATGGAACTGACCAGCCATCTGCTGACGGCTGCAGC CTTCGGCACGATGAAGAACAGCGAAAAATGA
Upstream 100 bases:
>100_bases TAACCTGGCTCAAAGAAAAATACCCCCCTTTGAGTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGT AAGAATCCGGAAACACTCAC
Downstream 100 bases:
>100_bases GCTTGCTGAGCAACTTATAGAACAAACCGGCGATAACACTCTGACGTTAATGGATAAAGGTTATTACTCACTGGGACTGT TAAATGCCCGGAGCCTGGCG
Product: IS4 orf
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVN RLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSEK
Sequences:
>Translated_196_residues MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVN RLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSEK >Mature_196_residues MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVN RLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSEK
Specific function: Involved in the transposition of the insertion sequence IS4 [H]
COG id: COG3385
COG function: function code L; FOG: Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 11 family [H]
Homologues:
Organism=Escherichia coli, GI1790729, Length=189, Percent_Identity=100, Blast_Score=397, Evalue=1e-112,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 - InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 22148; Mature: 22148
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHCCCHHHH VWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQL HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH WHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTS HHCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH HLLTAAAFGTMKNSEK HHHHHHHHHHHCCCCC >Mature Secondary Structure MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHCCCHHHH VWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQL HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH WHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTS HHCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH HLLTAAAFGTMKNSEK HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6268937; 7610040; 9278503 [H]