Click here to switch to the map view.

The map label for this gene is rfaP [H]

Identifier: 82545993

GI number: 82545993

Start: 3650756

End: 3651553

Strand: Reverse

Name: rfaP [H]

Synonym: SBO_3632

Alternate gene names: 82545993

Gene position: 3651553-3650756 (Counterclockwise)

Preceding gene: 82545994

Following gene: 82545992

Centisome position: 80.79

GC content: 47.49

Gene sequence:

>798_bases
ATGGTTGAACTTAAAGAGCCGTTTGCCACGTTATGGCGCGGTAAAGATCCTTTTGAGGAAGTTAAAACCTTGCAGGGTGA
GGTTTTTCGTGAACTGGAAACTCGCCGCACTCTGCGATTTGAAATGGCGGGCAAAAGCTATTTTCTCAAATGGCATCGCG
GCACGACCCTGAAAGAGATAATCAAAAATTTACTCTCATTGCGGATGCCAGTATTAGGCGCAGACCGCGAATGGAGTGCG
ATTCATCGACTGCGGGATGTCGGCGTTGATACTATGTATGGGGTGGCATTTGGCGAAAAAGGTATTAATCCGCTGAGCAG
AACCTCGTTTATTATTACCGAAGATCTGACCCCAACCATCAGTCTGGAAGATTACTGTGCTGACTGGGCGACCAACCCAC
CAGATGTTCGCGTAAAGCGTATGCTTATTAAGCGTGTCGCGACGATGGTGCGCGATATGCATGCTGCGGGCATTAACCAC
CGTGACTGTTATATCTGTCATTTCCTGCTGCACTTGCCTTTTTCCGGTAAGGAAGAGGAGTTAAAAATTTCGGTAATTGA
CCTACACCGGGCGCAGCTTCGCACGCGCGTTCCACGTCGTTGGCGCGATAAAGATCTTATAGGGCTTTATTTTTCTTCAA
TGAATATTGGCCTGACTCAGCGGGATATCTGGCGGTTTATGAAAGTGTATTTTGCCGCCCCGCTTAAAGACATTCTCAAG
CAGGAACAAGGACTGCTGTCGCAAGCAGAAGCAAAAGCCACAAAAATCAGGGAAAGAACGATTCGAAAATCGTTGTAA

Upstream 100 bases:

>100_bases
TTGCGCCAGGCCTGGGCGGAAAATGCGCGACATTATGCTGATACACAAGATTTATACAGTCTGCCAGAGAAAGCGGCGGA
TATCATAACGGGTGGTCTGG

Downstream 100 bases:

>100_bases
TTTCCGGAGAGAAATATGAGTGCCCACTATTTTAATCCACAAGAGATGATCAATAAGACAATCATCTTCGATGAAAGGCC
AGCGGCGTCAGTGGCATCAT

Product: RfaP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSA
IHRLRDVGVDTMYGVAFGEKGINPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
QEQGLLSQAEAKATKIRERTIRKSL

Sequences:

>Translated_265_residues
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSA
IHRLRDVGVDTMYGVAFGEKGINPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
QEQGLLSQAEAKATKIRERTIRKSL
>Mature_265_residues
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSA
IHRLRDVGVDTMYGVAFGEKGINPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
QEQGLLSQAEAKATKIRERTIRKSL

Specific function: Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

Organism=Escherichia coli, GI1790060, Length=265, Percent_Identity=83.7735849056604, Blast_Score=471, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017172
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: 2.7.-.-

Molecular weight: Translated: 30993; Mature: 30993

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHH
IKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGINPLSRTSFIITEDLTPTI
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCEEEEEECCCCCC
SLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFSGKEEE
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
EEEEEEHHHHHHHHHHCCHHCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QEQGLLSQAEAKATKIRERTIRKSL
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCHHHHH
IKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGINPLSRTSFIITEDLTPTI
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCEEEEEECCCCCC
SLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFSGKEEE
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
EEEEEEHHHHHHHHHHCCHHCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QEQGLLSQAEAKATKIRERTIRKSL
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA