Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is bisC [H]
Identifier: 82545916
GI number: 82545916
Start: 3560935
End: 3563154
Strand: Reverse
Name: bisC [H]
Synonym: SBO_3553
Alternate gene names: 82545916
Gene position: 3563154-3560935 (Counterclockwise)
Preceding gene: 82545919
Following gene: 82545913
Centisome position: 78.83
GC content: 53.83
Gene sequence:
>2220_bases ATGGAAAACTCCTTGCAGAGCGCGGTTCGCGACCAGGTTCACAGCAATACGCGGGTACGATTTCCAATGGTGCGCAAAGG CTTTCTCGCGTCACCGGAAAACCCGCAAGGCATTCGTGGGCAGGATGAATTTGTTCACGTGAGTTGGGATGAGGCGCTGG ATCTTATTCACCAACAACATAAACGCATTCGTGAGGCTTATGGTCCGGCATCGATTTTTGCTGGTTCCTACGGCTGGCGT TCAAACGGCGTGCTGCATAAGGCCTCGACATTATTACAACGCTATATGGCGCTGGCAGGCGGTTATACCGGGCATCTGGG GGATTATTCGACCGGTGCGGCACAGGCGATCATGCCGTATGTCGTGGGTGGCAGCGAAGTTTATCAACAGCAAACCAGTT GGCCGCTGGTGCTGGAACATAGCGATGTCGTGGTGTTGTGGAGTGCTAACCCACTCAATACGCTGAAAATTGCGTGGAAT GCATCTGATGAGCAGGGGCTTTCTTACTTTTCCGCACTGCGTGACAGCGGGAAAAAGCTGATCTGTATTGATCCAATGCG ATCGGAAACCGTCGATTTCTTTGGCGATAAAATGGAGTGGGTGGCACCGCACATGGGCACCGATGTTGCGCTGATGCTGG GGATCGCCCATACGCTGGTGGAAAATGGTTGGCACGACGAAGCGTTTCTGGCGCGTTGCACCACAGGTTATGCCGTCTTC GCCTCTTATTTGCTGGGCGAGAGTGACGGAATAGCCAAAACCGCCGAATGGGCGGCAGGGATTTGTGGGGTTCACGCAGC GAAAATTCGCGAGTTGGCGGCTCTTTTCCACCAAAACACGACCATGCTGATGGCTGGCTGGGGAATGCAGCGCCAACAGC TTGGTGAGCAAAAACACTGGATGATCGTCACGCTGGCGGCAATGTTGGGGCAAATCGGCACACCCGGCGGCGGTTTTGGT CTTTCTTATCATTTTGCCAATGGTGGTAATCCCACGCGGTGTTCTGCGGTGCTCTCTTCCATGCAGGGTAGCTTGCCGGG TGGCAGCGATGCGGTAGATAAAATCCCTGTTGCCCGTATTGTTGAAGCACTGGAAAACCCTGGCTGCGCATACCAACACA ATGGCATGAATCGCCTCTTCCCGGATATTCGCTTTATCTGGTGGGCGGGTGGCGCCAACTTCACCCATCATCAGGACACT AATCGCCTGATACGAGCTTGGCAAAAACCGGAGCTGGTAGTTATCTCCGAATGCTTCTGGACGGCGGCGGCAAAACACGC GGATATCGTTCTGCCTGCGACTACCTCTTTTGAGCGTAATGATCTCACCATGACCGGCGATTACAGTAATCAGCATCTGG TGCCGATGAAGCAAGTGGTGCCGCCACGCTATGAAGCGCGTAATGATTTTGATGTTTTTGCCGAGTTAAGTGAACGCTGG GAGAAGGGCGGTTATGCACGTTTTACGGAAGGAAAAAGTGAGTTGCAATGGCTGGAAACGTTTTATAACGTTGCCCGACA GCGCGGGGCAAGCCAGCAGGTTGAATTGCCGCCATTTGCTGAGTTCTGGCAAGCCAATCAGTTAATTGAGATGCCGGAAA ACCCGGACAGCGAGCGGTTTATTCGCTTCGCTGATTTTTGCCGCGATCCGCAGGCGCATCCATTAAAAACCGCCAGCGGT AAGATTGAAATCTTCTCGCAGCGTATTGCCGATTACGCTTATCCGGATTGCCCGGGGCATCCAATGTGGCTGGAGCCGGA CGAATGGCAGGGCAATGCCGAACCGGAACAGTTACAGGTACTTTCTGCTCATCCGGCGCATCGTCTGCACAGCCAGCTGA ATTACAGTTCTCTGCGCGAATTGTATGCGGTGGCAAATCGTGAGCCTGTCACCATTCATCCTGACGATGCCCTGGCGCGC GGCATTCAAGATGGCGATACTGTTCGGCTGTGGAACGCACGCGGGCAAATTCTTGCCGGAGTGGTCATTAGCGAGGGAAT TAAACCTGGCGTGATTTGTATTCACGAAGGGGCATGGCCGGATTTGGATTTAACCGCTGACGGTATTTGTAAAAACGGCG CAGTCAACGTGCTGACCAAAGATCTCCCCAGCTCGCGGCTGGGGAATGGCTGTGCGGGTAATACGGCGCTGGCATGGCTG GAAAAATACAACGGTCCGGAACTGACACTTACAGCGTTTGAACCACCGGCCAGCTCATAA
Upstream 100 bases:
>100_bases CTCACGATATTCCGTTCTGACTGCCGCCCACTGGGGGCCCATGCTGGTTGAAACCGACGGCGAAACCGTGTTTAGCTCGC GTGGCGCGTTAGCCACAGGA
Downstream 100 bases:
>100_bases TCCAGGTGGGTAGTTGGGTTTCATCCTGCCATGCGCAATCGACAATGTGAAAACCCTGCGCCTGGTAAAAATTTATCGCC GGTTGATTTTTTTGATAAAC
Product: biotin sulfoxide reductase
Products: Biotin. [C]
Alternate protein names: BDS reductase; BSO reductase [H]
Number of amino acids: Translated: 739; Mature: 739
Protein sequence:
>739_residues MENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWR SNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWN ASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVF ASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGEQKHWMIVTLAAMLGQIGTPGGGFG LSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDKIPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDT NRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERW EKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPQAHPLKTASG KIEIFSQRIADYAYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALAR GIQDGDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWL EKYNGPELTLTAFEPPASS
Sequences:
>Translated_739_residues MENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWR SNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWN ASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVF ASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGEQKHWMIVTLAAMLGQIGTPGGGFG LSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDKIPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDT NRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERW EKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPQAHPLKTASG KIEIFSQRIADYAYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALAR GIQDGDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWL EKYNGPELTLTAFEPPASS >Mature_739_residues MENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWR SNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWN ASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVF ASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGEQKHWMIVTLAAMLGQIGTPGGGFG LSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDKIPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDT NRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERW EKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPQAHPLKTASG KIEIFSQRIADYAYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALAR GIQDGDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWL EKYNGPELTLTAFEPPASS
Specific function: This enzyme may serve as a scavenger, allowing the cell to utilize biotin sulfoxide as a biotin source. It reduces a spontaneous oxidation product of biotin, D-biotin D-sulfoxide (BSO or BDS), back to biotin [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI145693196, Length=739, Percent_Identity=98.105548037889, Blast_Score=1507, Evalue=0.0, Organism=Escherichia coli, GI87081994, Length=741, Percent_Identity=64.2375168690958, Blast_Score=1025, Evalue=0.0, Organism=Escherichia coli, GI1787231, Length=747, Percent_Identity=44.3105756358768, Blast_Score=584, Evalue=1e-168, Organism=Escherichia coli, GI87081797, Length=757, Percent_Identity=31.9682959048877, Blast_Score=301, Evalue=9e-83, Organism=Escherichia coli, GI1787870, Length=753, Percent_Identity=30.1460823373174, Blast_Score=285, Evalue=6e-78, Organism=Escherichia coli, GI171474008, Length=753, Percent_Identity=30.1460823373174, Blast_Score=273, Evalue=3e-74, Organism=Escherichia coli, GI3868721, Length=473, Percent_Identity=23.2558139534884, Blast_Score=103, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 81803; Mature: 81803
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQH CCHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH KRIREAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPY HHHHHHCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH VVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL EECCHHHHHHCCCCCEEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEE ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVF EEECCCCHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGEQKHW HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCC MIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDKIPVARI HHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCHHHH VEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFW HHHHCCCCCCEEECCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEHHHH TAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERW HHHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH EKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERF HCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEECCCCCCHHHH IRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEPDEWQGNAEPEQLQV HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEE LSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQDGDTVRLWNARGQILAG ECCCCHHHHHHHCCHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCEEEEECCCCCEEEH VVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWL HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCHHHHHH EKYNGPELTLTAFEPPASS HHCCCCEEEEEECCCCCCC >Mature Secondary Structure MENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQH CCHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH KRIREAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPY HHHHHHCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH VVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL EECCHHHHHHCCCCCEEEECCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEE ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVF EEECCCCHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGEQKHW HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCC MIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDKIPVARI HHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCHHHH VEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFW HHHHCCCCCCEEECCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEHHHH TAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERW HHHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH EKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERF HCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEECCCCCCHHHH IRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEPDEWQGNAEPEQLQV HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEE LSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQDGDTVRLWNARGQILAG ECCCCHHHHHHHCCHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCEEEEECCCCCEEEH VVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWL HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCHHHHHH EKYNGPELTLTAFEPPASS HHCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: A Spontaneous Oxidation Product Of Biotin, D-Biotin D-Sulfoxide (Bso Or Bds), [C]
Specific reaction: Reduces A Spontaneous Oxidation Product Of Biotin, D-Biotin D-Sulfoxide (Bso Or Bds), Back To Biotin. [C]
General reaction: Reduction [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2180922; 8041620; 9278503 [H]