Definition | Shigella boydii Sb227, complete genome. |
---|---|
Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is yhjG [H]
Identifier: 82545888
GI number: 82545888
Start: 3521908
End: 3523983
Strand: Reverse
Name: yhjG [H]
Synonym: SBO_3523
Alternate gene names: 82545888
Gene position: 3523983-3521908 (Counterclockwise)
Preceding gene: 82545889
Following gene: 82545884
Centisome position: 77.97
GC content: 53.18
Gene sequence:
>2076_bases ATGAGGAAGCGAACGATGAGCAAGGCAGGCAAAATAACTGCTGCGATTTCAGGGGCTTTCTTGTTGTTGATTGTCGTGGC GATCATTTTGATTGCAACTTTTGACTGGAATCGACTCAAACCGACCATCAACCAGAAAGTCTCTGCGGAGTTGAATCGTC CGTTCGCTATCCGTGGCGATCTGGGCGTGGTGTGGGAGCGGCAAAAACAAGAAACTGGCTGGCGCAGCTGGGTGCCGTGG CCTCATGTACATGCAGAAGACATCATTCTTGGCAATCCACCGGATATTCCCGAAGTCACGATGGTGCATTTGCCGCGAGT AGAGGCAACGCTGGCACCGCTGGCGCTGCTGACCAAAACGGTCTGGCTGCCGTGGATCAAGCTCGAAAAGCCCGACGCGC GCCTGATTCGCCTCTCCGAAAAGAACAATAACTGGACGTTTAATCTCGCCAACGATGATAACAAAGACGCGAATGCAAAG CCGTCGGCATGGTCGTTTCGGCTGGATAATATTCTTTTCGATCAAGGGCGGATCGCCATTGATGACAAAGTAAGCAAAGC GGATCTGGAAATTTTTGTTGATCCGTTAGGCAAGCCGCTGCCGTTCAGCGAAGTTACTGGATCGAAAGGTAAAGCGGATA AAGAAAAGGTGGGCGATTACGTTTTTGGCCTGAAGGCGCAGGGACGTTATAACGGTGAACCGCTCACGGGTACGGGAAAA ATAGGCGGTATGCTGGCGCTGCGTGGCGAAGGGACGCCGTTTCCGGTACAGGCTGATTTCCGTTCAGGTAATACCCGTGT TGCTTTTGATGGCGTCGTGAATGACCCAATGAAGATGGGCGGTGTCGATTTACGGCTTAAATTTTCTGGCGATTCACTGG GTGATCTCTATGAACTGACGGGCGTTCTGCTGCCCGATACCCCGCCGTTTGAAACGGATGGTCGGCTGGTAGCGAAAATC GACACTGAAAAATCGTCGGTCTTTGATTATCGCGGTTTTAATGGGCGAATTGGCGATAGCGATATCCACGGTTCTCTGGT CTACACCACCGGAAAGCCGCGACCAAAACTGGAAGGTGATGTCGAGTCGCGGCAATTGCGGCTGGCGGACCTGGGACCGT TGATTGGCGTTGATTCGGGGAAAGGGGCAGAAAAGTCGAAACGGTCTGAACAGAAGAAGGGCGAAAAAAGCGTTCAGCCT GCGGGCAAAGTGCTGCCTTATGACCGCTTCGAAACCGATAAATGGGACGTTATGGATGCCGATGTTCGCTTCAAAGGCCG ACGTATCGAGCATGGCAGTAGCCTGCCGATTAGCGATCTTTCTACTCATATCATCCTCAAAAATGCTGACCTGCGCCTGC AACCGCTGAAATTTGGCATGGCGGGCGGCAGCATTGCGGCGAATATCCATCTGGAAGGCGATAAAAAGCCGATGCAGGGG CGGGCAGATATTCAGGCTCGTCGACTGAAACTGAAAGAACTGATGCCCGATGTGGAACTGATGCAGAAGACGCTGGGGGA AATGAACGGTGACGCGGAACTACGCGGTAGCGGTAACTCGGTGGCGGCGCTTTTAGGCAACAGTAACGGCAACCTGAAAC TGTTGATGAATGACGGGCTGGTGAGCCGCAACCTGATGGAGATTGTTGGGCTGAATGTCGGCAACTACATTGTCGGTGCG ATATTTGGTGACGATGAGGTGCGGGTGAACTGCGCGGCGGCGAATCTGAATATTGCCAACGGCGTAGCGCGCCCGCAGAT TTTTGCTTTCGATACTGAGAACGCGTTGATTAATGTTACCGGCACGGCAAGTTTTGCTTCGGAACAGCTGGATTTGACTA TTGATCCGGAGAGTAAAGGGATTCGGATTATCACACTGCGTTCGCCGCTGTATGTGCGTGGGACGTTTAAAAATCCGCAG GCTGGGGTGAAAGCCGGACCGCTGATTGCCCGTGGTGCCGTTGCGGCGGCACTGGCAACGCTGGTAACACCGGCGGCGGC GTTATTGGCACTGATCTCACCTTCCGAAGGGGAGGCTAATCAGTGTCGGACGATATTGTCGCAGATGAAGAAGTGA
Upstream 100 bases:
>100_bases CCCGGCACCGATAGAAACGCTGAATACGGCGGTTCTGGCGCTATAAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTT AGGACTGGCACAGGAAGAAT
Downstream 100 bases:
>100_bases TGAGGTTGGATTGTGTTTGCTGGTGAGTTCGGGAGCAGCGTGTTCCCCTCACCCTAATCCTCTCCCCAAAGGGGCGAGGA GACTGTTTTGTGCGTGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 691
Protein sequence:
>691_residues MRKRTMSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVWERQKQETGWRSWVPW PHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAK PSAWSFRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGK IGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKI DTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQP AGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQG RADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGA IFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQ AGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK
Sequences:
>Translated_691_residues MRKRTMSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVWERQKQETGWRSWVPW PHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAK PSAWSFRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGK IGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKI DTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQP AGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQG RADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGA IFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQ AGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK >Mature_691_residues MRKRTMSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGDLGVVWERQKQETGWRSWVPW PHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAK PSAWSFRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGK IGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKI DTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQP AGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQG RADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGA IFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQ AGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILSQMKK
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=686, Percent_Identity=100, Blast_Score=1386, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 75131; Mature: 75131
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRTMSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGD CCCCHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEEECC LGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKT CCEEEECCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHH VWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAI HHCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCEEECCCCEEE DDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGK CCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCC IGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELT CCCEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCHHHCCEEEEEEECCCCCCCHHHHC GVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGD EEECCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC VESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDA CCCCEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC DVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQG CEEECCEEECCCCCCCHHHCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC RADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGL CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEEECCCC VSRNLMEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVT CHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE GTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALAT ECCCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH LVTPAAALLALISPSEGEANQCRTILSQMKK HHHHHHHHHEEECCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MRKRTMSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSAELNRPFAIRGD CCCCHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEEECC LGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRVEATLAPLALLTKT CCEEEECCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHH VWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWSFRLDNILFDQGRIAI HHCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEECCEEECCCCEEE DDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFGLKAQGRYNGEPLTGTGK CCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCC IGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGGVDLRLKFSGDSLGDLYELT CCCEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCHHHCCEEEEEEECCCCCCCHHHHC GVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGDSDIHGSLVYTTGKPRPKLEGD EEECCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC VESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKSVQPAGKVLPYDRFETDKWDVMDA CCCCEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC DVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGMAGGSIAANIHLEGDKKPMQG CEEECCEEECCCCCCCHHHCCEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCC RADIQARRLKLKELMPDVELMQKTLGEMNGDAELRGSGNSVAALLGNSNGNLKLLMNDGL CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEEECCCC VSRNLMEIVGLNVGNYIVGAIFGDDEVRVNCAAANLNIANGVARPQIFAFDTENALINVT CHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE GTASFASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALAT ECCCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH LVTPAAALLALISPSEGEANQCRTILSQMKK HHHHHHHHHEEECCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]