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The map label for this gene is yhjB

Identifier: 82545884

GI number: 82545884

Start: 3516858

End: 3517460

Strand: Reverse

Name: yhjB

Synonym: SBO_3519

Alternate gene names: 82545884

Gene position: 3517460-3516858 (Counterclockwise)

Preceding gene: 82545888

Following gene: 82545882

Centisome position: 77.82

GC content: 48.42

Gene sequence:

>603_bases
ATGCAAATAGTCATGTTTGACAGGCAGTCAATATTTATTCATGGAATGAAAATCAGTTTACAGCAGCGTATTCCAGGGGT
GAGTATTCAGGGGGCCAGTCAGGCAGACGAGTTATGGCAAAAGCTGGAAAGTTACCCTGAAGCCTTAGTTATGCTCGATG
GCGATCAGGATGGTGAGTTTTGCTACTGGTTGCTGCAAAAAACCGTGGTGCAGTTTCCTGAGGTTAAGGTGTTAATCACG
GCGACGGATTGCAATAAACGGTGGTTACAGGAAGTTATCCATTTTAATGTGCTGGCCATTGTGCCTCGTGATTCAACCGT
CGAGACATTTGCGTTGGCGGTAAATAGTGCGGCGATGGGGATGATGTTTCTGCCTGGAGACTGGCGGACGACGCCGGAAA
AGGACATTAAAGATCTCAAATCGTTAAGCGCCCGCCAGCGGGAGATTTTAACCATGTTAGCGGCGGGCGAGTCAAATAAG
GAGATCGGCAGAGCGCTGAATATCAGTACCGGAACGGTAAAAGCGCATCTGGAATCCCTGTATCGCCGTCTGGAAGTGAA
AAATCGCACCCAGGCGGCAATGATGTTAAATATCTCCTCCTGA

Upstream 100 bases:

>100_bases
TAGAATGGCCACCGCCAAATGGCGAATTCTTATTTTTTCTCGCGGGTAATACCCTTCCACTACTTAAGTCTTTTTAACAT
ATTCAGGTGGAGATTCAGTT

Downstream 100 bases:

>100_bases
AGAGGATAATTTTACAGCCAGCAGGAAGTTAGCGGCTGGCTGTAAAAATATTATGGTTCGCCGTACAAACCAATTAAACG
GCGTACCACACCGTTAGTCC

Product: regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS

Sequences:

>Translated_200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS
>Mature_200_residues
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLIT
ATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=100, Blast_Score=416, Evalue=1e-118,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YHJB_ECOLI (P37640)

Other databases:

- EMBL:   U00039
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   S47740
- RefSeq:   AP_004273.1
- RefSeq:   NP_417977.1
- ProteinModelPortal:   P37640
- SMR:   P37640
- DIP:   DIP-12377N
- IntAct:   P37640
- MINT:   MINT-1305907
- STRING:   P37640
- EnsemblBacteria:   EBESCT00000004416
- EnsemblBacteria:   EBESCT00000016024
- GeneID:   948036
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW3488
- KEGG:   eco:b3520
- EchoBASE:   EB2157
- EcoGene:   EG12246
- eggNOG:   COG2197
- GeneTree:   EBGT00050000008646
- HOGENOM:   HBG467979
- OMA:   SERQHEV
- ProtClustDB:   CLSK880701
- BioCyc:   EcoCyc:EG12246-MONOMER
- Genevestigator:   P37640
- GO:   GO:0005622
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421

Pfam domain/function: PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector

EC number: NA

Molecular weight: Translated: 22605; Mature: 22605

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
CEEEEEECCEEEEEEEEEEHHHCCCCCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCH
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEEECCCCHHHHHEEHHHHHCE
MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHHHHHHH
YRRLEVKNRTQAAMMLNISS
HHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
CEEEEEECCEEEEEEEEEEHHHCCCCCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCH
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCEEEEEEECCCCHHHHHEEHHHHHCE
MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHHHHHHH
YRRLEVKNRTQAAMMLNISS
HHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503