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The map label for this gene is yfeR

Identifier: 82544868

GI number: 82544868

Start: 2423799

End: 2424725

Strand: Reverse

Name: yfeR

Synonym: SBO_2432

Alternate gene names: 82544868

Gene position: 2424725-2423799 (Counterclockwise)

Preceding gene: 82544870

Following gene: 82544866

Centisome position: 53.65

GC content: 53.83

Gene sequence:

>927_bases
ATGAATTATTCTTTAAAACAATTAAAGGTTTTCGTCACAGTAGCGCAGGAGAAAAGTTTTAGTCGTGCAGGAGAGCGTAT
CGGCTTGAGCCAGTCGGCAGTAAGTCACAGTGTGAAGGAGCTGGAAAATCATACTGGTGTTCGCCTGCTGGACAGAACCA
CGCGTGAAGTGGTGCTTACAGATGCAGGGCAGCAGTTGGCTTTGCGTCTTGAGCGACTGCTGGATGAACTTAACAGCACG
TTGCGCGATACCGGGCGTATGGGGCAACAACTGAGCGGAAAAGTTCGGGTCGCTGCCAGCCAGACCATTTCCGCGCATCT
TATTCCGCAATGCATTGCTGAAAGCCATCGCCGCTATCCAGATATTCAGTTTGTCCTGCACGATCGTCCGCAGCAGTGGG
TGATGGAAAGTATTCGCCAGGGAGATGTCGACTTTGGCATCGTCATCGATCCAGGCCCAGTGGGCGATCTGCAATGTGAA
GCGATTCTTTCCGAGCCTTTCTTTCTGCTTTGCCATCGCGATAGCGCTTTGGCCGTGGAAGATTATGTACCCTGGCAGGC
ATTACAGGGAGCGAAATTGGTGTTGCAGGATTACGCGTCAGGCAGCCGACCGCTGATTGACGCAGCGCTGGCGCGCAATG
GTATTCAGGCGAATATTGTGCAGGAGATTGGACATCCGGCGACGCTGTTCCCGATGGTAGCCGCAGGCATCGGCATCAGT
ATTCTTCCCGCACTGGCGCTACCATTGCCTGAAGGTAGCCCACTGGTGGTAAAGCGCATTACGCCGGTTGTTGAACGCCA
GTTGATGCTGGTGCGCAGGAAGAACCGTTCACTTTCCACCGCCGCTGAAGCGTTATGGGACGTGGTACGAGACCAGGGCA
ATGCGCTAATGGCTGGTCGGGAAGGGGATCCGTTGTATCAGATATAG

Upstream 100 bases:

>100_bases
AAAAGTTTCATAAAGACTCCAGATGATCGATGGTTCTATTGTGCTTCTTCCAGTTTGAGAAATAAAATTGATTTATTGCA
TCCATTCATGAAGAAAACAG

Downstream 100 bases:

>100_bases
ATATCGATATGAGTCGTTTTTTCAACAGGATTTAGAAGGGATACATCCAGAGACAAACGCTGCTCTTTCTCCTGCGCCTT
TTCTGCCTGCTGTTTCTGCA

Product: transcriptional regulator LYSR-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNST
LRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI

Sequences:

>Translated_308_residues
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNST
LRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI
>Mature_308_residues
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNST
LRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=100, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=33.1010452961672, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI157672245, Length=297, Percent_Identity=27.9461279461279, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=27.2413793103448, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=29.1497975708502, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=28.0821917808219, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=29.9180327868852, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=28.2786885245902, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=27.6859504132231, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787601, Length=169, Percent_Identity=28.9940828402367, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787128, Length=123, Percent_Identity=34.9593495934959, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081904, Length=179, Percent_Identity=29.608938547486, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786401, Length=126, Percent_Identity=34.1269841269841, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=27.810650887574, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789506, Length=292, Percent_Identity=23.6301369863014, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787589, Length=122, Percent_Identity=32.7868852459016, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=246, Percent_Identity=22.3577235772358, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=303, Percent_Identity=25.0825082508251, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=167, Percent_Identity=27.5449101796407, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=123, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=22.3484848484848, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=23.3870967741935, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786508, Length=99, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693193, Length=125, Percent_Identity=32.8, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=118, Percent_Identity=28.8135593220339, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789204, Length=286, Percent_Identity=23.0769230769231, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1789440, Length=168, Percent_Identity=27.9761904761905, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YFER_ECOLI (P0ACR7)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H65014
- RefSeq:   AP_003002.1
- RefSeq:   NP_416904.1
- ProteinModelPortal:   P0ACR7
- SMR:   P0ACR7
- STRING:   P0ACR7
- EnsemblBacteria:   EBESCT00000003816
- EnsemblBacteria:   EBESCT00000014348
- GeneID:   946873
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2400
- KEGG:   eco:b2409
- EchoBASE:   EB3911
- EcoGene:   EG14159
- eggNOG:   COG0583
- GeneTree:   EBGT00050000008327
- HOGENOM:   HBG685425
- OMA:   AHEMENG
- ProtClustDB:   CLSK880925
- BioCyc:   EcoCyc:G7257-MONOMER
- Genevestigator:   P0ACR7
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 33904; Mature: 33904

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLT
CCCCHHHHEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEE
DAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
DIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVE
CEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCEEHH
DYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
HCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCHH
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECC
EGDPLYQI
CCCCCCCC
>Mature Secondary Structure
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLT
CCCCHHHHEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEE
DAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
DIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVE
CEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEEECCCCEEHH
DYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGIS
HCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCHH
ILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECC
EGDPLYQI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503