Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is yfcZ [H]
Identifier: 82544824
GI number: 82544824
Start: 2370974
End: 2371282
Strand: Reverse
Name: yfcZ [H]
Synonym: SBO_2381
Alternate gene names: 82544824
Gene position: 2371282-2370974 (Counterclockwise)
Preceding gene: 82544827
Following gene: 82544823
Centisome position: 52.46
GC content: 51.46
Gene sequence:
>309_bases GTGCACATACAGAGGAAATCAACGATGAGTAAATGTAGTGCTGATGAAACCCCGGTTTGCTGCTGTATGGATGTTGGCAC CATTATGGACAACTCCGACTGCACCGCGTCTTACAGCCGCGTGTTTGCAAACCGCGCAGAAGCAGAACAAACGCTGGCGG CGTTGACTGAAAAAGCCCGTAGCGTGGAATCCGAACCGTGCAAAATCTCCCCGACTTTCACTGAAGAGTCTGACGGTGTG CGCCTGGATATCGATTTCACTTTTGCCTGCGAAGCTGAAATGCTGATCTTCCAGCTGGGTCTGCGTTAA
Upstream 100 bases:
>100_bases AAGTGTGATTTCGGTCACTTATCCGATTTTGCAGAATTAACAACTGGAGCAGCACTTTCCGGAAGCGTAAAATATCCACA ACGTTTATCTGGCACCTTGG
Downstream 100 bases:
>100_bases TTCCTCTCGGGTACGTTCGCCCCTGTCAGTTGCTGGCAGGGGCGTTTTCTTTTCTTTCTCCTGTCTTCACTGTGTCATAG CTCCCACTTTCCTTTTTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 102
Protein sequence:
>102_residues MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCKISPTFTEESDGV RLDIDFTFACEAEMLIFQLGLR
Sequences:
>Translated_102_residues MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCKISPTFTEESDGV RLDIDFTFACEAEMLIFQLGLR >Mature_102_residues MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSVESEPCKISPTFTEESDGV RLDIDFTFACEAEMLIFQLGLR
Specific function: Unknown
COG id: COG3691
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0381 family [H]
Homologues:
Organism=Escherichia coli, GI87082087, Length=94, Percent_Identity=98.936170212766, Blast_Score=191, Evalue=6e-51, Organism=Escherichia coli, GI1790357, Length=99, Percent_Identity=40.4040404040404, Blast_Score=74, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005272 [H]
Pfam domain/function: PF04175 DUF406 [H]
EC number: NA
Molecular weight: Translated: 11286; Mature: 11286
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.9 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 11.8 %Cys+Met (Translated Protein) 6.9 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 11.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKAR CCCCCCHHHHHCCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHEEEEEECCC >Mature Secondary Structure MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKAR CCCCCCHHHHHCCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]