Definition | Shigella boydii Sb227, complete genome. |
---|---|
Accession | NC_007613 |
Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is insN1 [C]
Identifier: 82543017
GI number: 82543017
Start: 444514
End: 444801
Strand: Direct
Name: insN1 [C]
Synonym: SBO_0430
Alternate gene names: 82543017
Gene position: 444514-444801 (Clockwise)
Preceding gene: 82543010
Following gene: 82543018
Centisome position: 9.83
GC content: 47.22
Gene sequence:
>288_bases ATGAGCAGAAAAAACCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG CGAGATATATTAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGA
Upstream 100 bases:
>100_bases CTGATGATAGGATGAGTATCCATAATGATCACCGACTGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAAT GGCATCAGAAGGAGCTAATA
Downstream 100 bases:
>100_bases AAAATACGCGTTAATCGAATAATGGCGACAACAATTTCCCATTGAAGCGATGTGTCAGGTATTTGGTGTATCCAGGAGCG GTTATTACAACTGGGTACAG
Product: IS600 ORF1
Products: NA
Alternate protein names: ISO-S3 11 kDa protein [H]
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE RDILKKQQRILHRSR
Sequences:
>Translated_95_residues MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE RDILKKQQRILHRSR >Mature_94_residues SRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLER DILKKQQRILHRSR
Specific function: Involved in the transposition of the insertion sequence is911 [C]
COG id: COG2963
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR002514 [H]
Pfam domain/function: PF01527 Transposase_8 [H]
EC number: NA
Molecular weight: Translated: 10787; Mature: 10655
Theoretical pI: Translated: 11.31; Mature: 11.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCCCHHH AELESEILQLRKALNEARLERDILKKQQRILHRSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCCCCCHHH AELESEILQLRKALNEARLERDILKKQQRILHRSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2824781 [H]