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The map label for this gene is codA [H]

Identifier: 78779784

GI number: 78779784

Start: 1316261

End: 1317496

Strand: Reverse

Name: codA [H]

Synonym: PMT9312_1400

Alternate gene names: 78779784

Gene position: 1317496-1316261 (Counterclockwise)

Preceding gene: 78779791

Following gene: 78779783

Centisome position: 77.08

GC content: 31.96

Gene sequence:

>1236_bases
TTGAGTAATTCCGGCACAGCTGAGGTTCTTATTCCCAGAAGCCTTTTTTTAATAGAAGATTTTGATGGCCTCAATATTGA
TGTAGAGGATTTATGTTCAGTTTCGATTACTTGGGAAAATGGATTTGTTTCTGAGTTAAAGTCCTTAAAAATTAAAGATA
AAAAACCAAAAAATATTTTACTCCCAAGATTTGTTGAGACGCATTCGCATTTTGATAAATCTTTTACATGGGAAGATTTT
CCTAATTTAGAATCAAACTATAGTGGTGCATTATCAGTAAATCTTGAAGAACATAGAACTAGAAATACAGATAAGGTTAT
TGAGAGAGTTGAGAAATCATTAAAACTTGCCATAAAAAATGGATACCGAGCTATTAGAAGTCATATTGATACATACAAAA
GTCAGTCGATTGATATTTGGATTGAACTTTTTAAATTACAAAAAAAATTTTCATCTGAATTGAAATTACAATTCGTTGCT
CTAGCTCCATTGGAATTCTGGGATACTTCTAATGGAGAAGAATTAGCAAAAATATTTTCCTCTCGTGGAGGCATTTTAGG
GGGTGTTATTGTCCCCCCTTTTAATAAAAAAGATACAAGCAAATTTCTCGCAAAGATGCTTCTTCTTGCGAGTAAATATA
AATTAGAAATTGATTTGCATATAGATGAATCAACTATTGAGCCTGGAGCAGGAATAAAAGTTTTATTAGAGACAATGGAA
AATTTAAATATTAATAGTATTCCCATTACTTGTAGTCATCTAAGTAGTCTTATTTCACTAAGTCATAGTGAGATTACATA
TTTAGGAGAAAAAATGGCTGAGAAAAATATTAAGGTTATTGCTCTGCCTCTGACAAATTTTTGGCTTCTCAATCGAAATA
ATAAAACTACCTCCTTAAAAAGACCAGTTGCGCCAATAAAGCAATTACAAAAATCTCACGTGGATGTTTCTATAGGTAGT
GATAACGTTCAAGATCCTTGGTACCCATTTGGTAATTTTGACCCTTTTTATATGTTGTCATGCTCGATACCTATGCTTCA
ACTAAATCCTTGGGAGAGAATGACTCTTTCTTCTATTTTTTTAGCTCCAAGTAGATTATTAAATTTAAAATGGGATGGTT
TAATTAAAGTGGGGTGCCCTGCTGATTTCGTGATTTTAGAAGCACAAAGATGGGCAGATGTTTTTTCGAGCACTTTAAAA
AGAAAAGTATTTATAAAAGGCGATTTACATTGCTGA

Upstream 100 bases:

>100_bases
GGTAATTTTTCATAGTTATTTTATCTTTTAGCGAAATTTGAATTATTTTCTTAAGCATTAAAGTTTTCTTATGTTCTAAA
ATAAAAGAAAATTAAAAGAT

Downstream 100 bases:

>100_bases
TCGACTAATTTATATACAAAACATAAAAAATTTATTTAATGACATCAAATAATCTTAAATTTATAGACAAATTTAGGGAA
GTTAAAAACTTAGAGATTAT

Product: putative cytosine deaminase

Products: NA

Alternate protein names: Cytosine aminohydrolase [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSNSGTAEVLIPRSLFLIEDFDGLNIDVEDLCSVSITWENGFVSELKSLKIKDKKPKNILLPRFVETHSHFDKSFTWEDF
PNLESNYSGALSVNLEEHRTRNTDKVIERVEKSLKLAIKNGYRAIRSHIDTYKSQSIDIWIELFKLQKKFSSELKLQFVA
LAPLEFWDTSNGEELAKIFSSRGGILGGVIVPPFNKKDTSKFLAKMLLLASKYKLEIDLHIDESTIEPGAGIKVLLETME
NLNINSIPITCSHLSSLISLSHSEITYLGEKMAEKNIKVIALPLTNFWLLNRNNKTTSLKRPVAPIKQLQKSHVDVSIGS
DNVQDPWYPFGNFDPFYMLSCSIPMLQLNPWERMTLSSIFLAPSRLLNLKWDGLIKVGCPADFVILEAQRWADVFSSTLK
RKVFIKGDLHC

Sequences:

>Translated_411_residues
MSNSGTAEVLIPRSLFLIEDFDGLNIDVEDLCSVSITWENGFVSELKSLKIKDKKPKNILLPRFVETHSHFDKSFTWEDF
PNLESNYSGALSVNLEEHRTRNTDKVIERVEKSLKLAIKNGYRAIRSHIDTYKSQSIDIWIELFKLQKKFSSELKLQFVA
LAPLEFWDTSNGEELAKIFSSRGGILGGVIVPPFNKKDTSKFLAKMLLLASKYKLEIDLHIDESTIEPGAGIKVLLETME
NLNINSIPITCSHLSSLISLSHSEITYLGEKMAEKNIKVIALPLTNFWLLNRNNKTTSLKRPVAPIKQLQKSHVDVSIGS
DNVQDPWYPFGNFDPFYMLSCSIPMLQLNPWERMTLSSIFLAPSRLLNLKWDGLIKVGCPADFVILEAQRWADVFSSTLK
RKVFIKGDLHC
>Mature_410_residues
SNSGTAEVLIPRSLFLIEDFDGLNIDVEDLCSVSITWENGFVSELKSLKIKDKKPKNILLPRFVETHSHFDKSFTWEDFP
NLESNYSGALSVNLEEHRTRNTDKVIERVEKSLKLAIKNGYRAIRSHIDTYKSQSIDIWIELFKLQKKFSSELKLQFVAL
APLEFWDTSNGEELAKIFSSRGGILGGVIVPPFNKKDTSKFLAKMLLLASKYKLEIDLHIDESTIEPGAGIKVLLETMEN
LNINSIPITCSHLSSLISLSHSEITYLGEKMAEKNIKVIALPLTNFWLLNRNNKTTSLKRPVAPIKQLQKSHVDVSIGSD
NVQDPWYPFGNFDPFYMLSCSIPMLQLNPWERMTLSSIFLAPSRLLNLKWDGLIKVGCPADFVILEAQRWADVFSSTLKR
KVFIKGDLHC

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786531, Length=358, Percent_Identity=26.2569832402235, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1786517, Length=361, Percent_Identity=24.6537396121884, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: =3.5.4.1 [H]

Molecular weight: Translated: 46696; Mature: 46564

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSGTAEVLIPRSLFLIEDFDGLNIDVEDLCSVSITWENGFVSELKSLKIKDKKPKNIL
CCCCCCEEEEECCEEEEEECCCCCCCCHHHHEEEEEEECCCHHHHHHHCCCCCCCCCCCC
LPRFVETHSHFDKSFTWEDFPNLESNYSGALSVNLEEHRTRNTDKVIERVEKSLKLAIKN
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHH
GYRAIRSHIDTYKSQSIDIWIELFKLQKKFSSELKLQFVALAPLEFWDTSNGEELAKIFS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCHHHHHHHHH
SRGGILGGVIVPPFNKKDTSKFLAKMLLLASKYKLEIDLHIDESTIEPGAGIKVLLETME
HCCCEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCHHHHHHHHH
NLNINSIPITCSHLSSLISLSHSEITYLGEKMAEKNIKVIALPLTNFWLLNRNNKTTSLK
CCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCHH
RPVAPIKQLQKSHVDVSIGSDNVQDPWYPFGNFDPFYMLSCSIPMLQLNPWERMTLSSIF
CCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCHHHHHHHHH
LAPSRLLNLKWDGLIKVGCPADFVILEAQRWADVFSSTLKRKVFIKGDLHC
HCHHHHEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHEEEEEEECCCC
>Mature Secondary Structure 
SNSGTAEVLIPRSLFLIEDFDGLNIDVEDLCSVSITWENGFVSELKSLKIKDKKPKNIL
CCCCCEEEEECCEEEEEECCCCCCCCHHHHEEEEEEECCCHHHHHHHCCCCCCCCCCCC
LPRFVETHSHFDKSFTWEDFPNLESNYSGALSVNLEEHRTRNTDKVIERVEKSLKLAIKN
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHH
GYRAIRSHIDTYKSQSIDIWIELFKLQKKFSSELKLQFVALAPLEFWDTSNGEELAKIFS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCHHHHHHHHH
SRGGILGGVIVPPFNKKDTSKFLAKMLLLASKYKLEIDLHIDESTIEPGAGIKVLLETME
HCCCEEECEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCHHHHHHHHH
NLNINSIPITCSHLSSLISLSHSEITYLGEKMAEKNIKVIALPLTNFWLLNRNNKTTSLK
CCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCHH
RPVAPIKQLQKSHVDVSIGSDNVQDPWYPFGNFDPFYMLSCSIPMLQLNPWERMTLSSIF
CCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCHHHHHHHHH
LAPSRLLNLKWDGLIKVGCPADFVILEAQRWADVFSSTLKRKVFIKGDLHC
HCHHHHEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1640834; 8450832; 9278503 [H]