Click here to switch to the map view.

The map label for this gene is 78779054

Identifier: 78779054

GI number: 78779054

Start: 630810

End: 631547

Strand: Direct

Name: 78779054

Synonym: PMT9312_0669

Alternate gene names: NA

Gene position: 630810-631547 (Clockwise)

Preceding gene: 78779053

Following gene: 78779060

Centisome position: 36.91

GC content: 32.11

Gene sequence:

>738_bases
ATGGATTTAATTAGAAATCAATTTTTTATAGGTTTTTGCATTAATTTTATTTTGATTTATATATTTTGCAAGATTCCTTT
GATGACAAAAAGTGGTTGGATAAGTGCAGGCATTTTAGGCACAATTTTGTGGGGATGTTTGTCTTGGCAGGGATGGATGT
CAGTTGTAATTTATTTATTATTTGGATCTCTCGTTACCAAAATAGGTTTCAAATTTAAAAAAGAACAAGGAATAGCTGAA
AAAAGAGGTGGGAGGAGAGGTCCTGAAAATGTATGGGGCTCTGCAGCTACAGGATTAGTTCTTGCCATGATGACTAAATT
TAATCCTGCCAACGTAGTGATGTTTAAAATAGGATTTGCTGCAAGTTTTGCTGCAAAGTTGGCGGATACTTTTGGCAGCG
AAATTGGGAAAAGGTTTGGAAAGGATACATATTTAATTACTTCACTTAAAAAGGTTGAGAGAGGAACTGAAGGAGGAGTA
AGTTTAGAAGGAACATTAGCTAGTGTTTTGGGATCAATATTTATGGCTTTTGTAATGCTTCGTCTATCAATTATTTCTAC
AAAATACCATTTCATAGTTGTTGCATTTTCGGGATTTTTGGCCACAATTTCTGAGAGTATTATTGGTGCTAAATTTCAAA
ACAAATATAAATTAAGTAATGAATTGGTAAATGCTATTCAGACAAGTATTGCTTCTGTTTTTGCTATCTTTTCTATTATT
TTATATTCAAATTTTTAA

Upstream 100 bases:

>100_bases
ACTTTCCGACAATATCTTAAGAACTTCAACGGCTAGTATTAACGCATCATCAATTCTCAATCAGTGGAGAATTGATTTGA
AATTAAGGAATTAGATAAAT

Downstream 100 bases:

>100_bases
ATTAAAAATATTTGGACAGACTTAGGATTCCTTCCATTTTGTAAGAATCTCCCAGCTCTTTAGTCTTTGGAAAATCCAGA
AATGACCTTCGGAATTTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDLIRNQFFIGFCINFILIYIFCKIPLMTKSGWISAGILGTILWGCLSWQGWMSVVIYLLFGSLVTKIGFKFKKEQGIAE
KRGGRRGPENVWGSAATGLVLAMMTKFNPANVVMFKIGFAASFAAKLADTFGSEIGKRFGKDTYLITSLKKVERGTEGGV
SLEGTLASVLGSIFMAFVMLRLSIISTKYHFIVVAFSGFLATISESIIGAKFQNKYKLSNELVNAIQTSIASVFAIFSII
LYSNF

Sequences:

>Translated_245_residues
MDLIRNQFFIGFCINFILIYIFCKIPLMTKSGWISAGILGTILWGCLSWQGWMSVVIYLLFGSLVTKIGFKFKKEQGIAE
KRGGRRGPENVWGSAATGLVLAMMTKFNPANVVMFKIGFAASFAAKLADTFGSEIGKRFGKDTYLITSLKKVERGTEGGV
SLEGTLASVLGSIFMAFVMLRLSIISTKYHFIVVAFSGFLATISESIIGAKFQNKYKLSNELVNAIQTSIASVFAIFSII
LYSNF
>Mature_245_residues
MDLIRNQFFIGFCINFILIYIFCKIPLMTKSGWISAGILGTILWGCLSWQGWMSVVIYLLFGSLVTKIGFKFKKEQGIAE
KRGGRRGPENVWGSAATGLVLAMMTKFNPANVVMFKIGFAASFAAKLADTFGSEIGKRFGKDTYLITSLKKVERGTEGGV
SLEGTLASVLGSIFMAFVMLRLSIISTKYHFIVVAFSGFLATISESIIGAKFQNKYKLSNELVNAIQTSIASVFAIFSII
LYSNF

Specific function: Unknown

COG id: COG1836

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TMEM19 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002794 [H]

Pfam domain/function: PF01940 DUF92 [H]

EC number: NA

Molecular weight: Translated: 26941; Mature: 26941

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]