| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
Click here to switch to the map view.
The map label for this gene is ucpA [C]
Identifier: 78778920
GI number: 78778920
Start: 501103
End: 501837
Strand: Direct
Name: ucpA [C]
Synonym: PMT9312_0535
Alternate gene names: 78778920
Gene position: 501103-501837 (Clockwise)
Preceding gene: 78778919
Following gene: 78778921
Centisome position: 29.32
GC content: 35.51
Gene sequence:
>735_bases GTGAAATCCCCCCCCAATCTGAATAAATTGAAACTAGCTTTTATAACAGGTGCTACGAAAGGTATTGGTAGATCTACCGC AATTACTTTTGCTAAAGCTGGTTGGGATTTAATTCTACTTTCCAGGAATATGGATTTATTGGAGAAACTAAAGAGTGAAT TATTGACTACTAAATCAAAAATTAGCCTGGTTAAATGTGATTTAGCTAATCCTATAGGAATAGAGAATTGTGTTGGAGAA GCAATTGAGAAATATGGTTGCCCTTCAGTCTTGATAAATAATGCCGGTTGCGCATTTAATGGGTCTTTAGTTGAAATGGA TTTTGGGCAATGGGAACAAACAATTCAAATAAACCTTACGAGTGTTTTTCAAATTTGCAGCTCAATAATCCCTCAAATGA GAAAAAATGGTGGTTTAGTAATTAATGTTAGTAGTCATGCCTCTTATAATGCTTTCCCTCAATGGGGTGCATATTGTATT TCAAAATCTGCACTCACCATGTTTACTAAATGCTTGAGGGAAGAGGAGAGATCCAATTCAATAAGAGCATGCACAATAAC TTTAGGTTCAGTAAATACTCCTCTTTGGGACTCCGAATCAATTAATTCTGATTTTGATAGAACTTCTATGCTCTCCTCAA ATAAGGTATCAGATACTATTCTTTATATGGCACAACAACCCGAGTCACAATTGATTGAAGACTTAACTTTGATGCCTTCT GGAGGTGCTTTTTGA
Upstream 100 bases:
>100_bases CTACTGCAAATGACTAAAGATGAACTCATTGAGGAAAGATATAAAAAATTTAGGGTTTTAGGTAAATTTATCGAAGCAAA TAATATTGAAGAGATTTATA
Downstream 100 bases:
>100_bases AAATTCTATTTATCTTTTTAATCTTTAAAAGGTGATTTTTTTTAGGACTATTTGAACCCGATTGAACAAGAGAATGTGAT ATAGTGTATAAGCAATTAAG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKSPPNLNKLKLAFITGATKGIGRSTAITFAKAGWDLILLSRNMDLLEKLKSELLTTKSKISLVKCDLANPIGIENCVGE AIEKYGCPSVLINNAGCAFNGSLVEMDFGQWEQTIQINLTSVFQICSSIIPQMRKNGGLVINVSSHASYNAFPQWGAYCI SKSALTMFTKCLREEERSNSIRACTITLGSVNTPLWDSESINSDFDRTSMLSSNKVSDTILYMAQQPESQLIEDLTLMPS GGAF
Sequences:
>Translated_244_residues MKSPPNLNKLKLAFITGATKGIGRSTAITFAKAGWDLILLSRNMDLLEKLKSELLTTKSKISLVKCDLANPIGIENCVGE AIEKYGCPSVLINNAGCAFNGSLVEMDFGQWEQTIQINLTSVFQICSSIIPQMRKNGGLVINVSSHASYNAFPQWGAYCI SKSALTMFTKCLREEERSNSIRACTITLGSVNTPLWDSESINSDFDRTSMLSSNKVSDTILYMAQQPESQLIEDLTLMPS GGAF >Mature_244_residues MKSPPNLNKLKLAFITGATKGIGRSTAITFAKAGWDLILLSRNMDLLEKLKSELLTTKSKISLVKCDLANPIGIENCVGE AIEKYGCPSVLINNAGCAFNGSLVEMDFGQWEQTIQINLTSVFQICSSIIPQMRKNGGLVINVSSHASYNAFPQWGAYCI SKSALTMFTKCLREEERSNSIRACTITLGSVNTPLWDSESINSDFDRTSMLSSNKVSDTILYMAQQPESQLIEDLTLMPS GGAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=207, Percent_Identity=28.5024154589372, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI142976729, Length=166, Percent_Identity=32.5301204819277, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=27.5675675675676, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=25.609756097561, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=29.5918367346939, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI5031737, Length=184, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI224922801, Length=166, Percent_Identity=30.1204819277108, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI4557649, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI126723191, Length=174, Percent_Identity=27.0114942528736, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI32455239, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI5031765, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI40254992, Length=221, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7705925, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI19923817, Length=195, Percent_Identity=23.5897435897436, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI210032110, Length=166, Percent_Identity=27.1084337349398, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI4507185, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI59889578, Length=169, Percent_Identity=26.6272189349112, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI7706318, Length=169, Percent_Identity=25.4437869822485, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=35.2631578947368, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788459, Length=189, Percent_Identity=27.5132275132275, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=25.4098360655738, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=23.6286919831224, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787905, Length=141, Percent_Identity=30.4964539007092, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=27.710843373494, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789208, Length=203, Percent_Identity=25.1231527093596, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI2367175, Length=209, Percent_Identity=27.7511961722488, Blast_Score=68, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=33.6734693877551, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=235, Percent_Identity=26.8085106382979, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=29.3193717277487, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17531453, Length=202, Percent_Identity=29.2079207920792, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17538480, Length=256, Percent_Identity=26.953125, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=30.8510638297872, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=27.3764258555133, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=29.5918367346939, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=189, Percent_Identity=29.1005291005291, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562904, Length=191, Percent_Identity=28.2722513089005, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17560220, Length=196, Percent_Identity=28.0612244897959, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=26.3565891472868, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=26.2548262548263, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17563726, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17562990, Length=189, Percent_Identity=28.042328042328, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=25.6198347107438, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17570069, Length=207, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17559552, Length=242, Percent_Identity=27.6859504132231, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17538486, Length=191, Percent_Identity=28.2722513089005, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17560176, Length=236, Percent_Identity=29.2372881355932, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI25152911, Length=258, Percent_Identity=27.1317829457364, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=24.6212121212121, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=25.3787878787879, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115534694, Length=178, Percent_Identity=28.6516853932584, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17557668, Length=244, Percent_Identity=26.6393442622951, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560676, Length=187, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=26.8595041322314, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=155, Percent_Identity=29.6774193548387, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212646214, Length=251, Percent_Identity=25.4980079681275, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=24.6231155778894, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=27.6422764227642, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=29.2553191489362, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=28.2786885245902, Blast_Score=103, Evalue=9e-23, Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=31.7948717948718, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=28.9340101522843, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=28.9340101522843, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24641232, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24663911, Length=246, Percent_Identity=26.8292682926829, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI21355319, Length=201, Percent_Identity=30.3482587064677, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI116007238, Length=177, Percent_Identity=30.5084745762712, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=28.8, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI281364494, Length=246, Percent_Identity=26.8292682926829, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358495, Length=234, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007234, Length=247, Percent_Identity=26.7206477732794, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=25.4098360655738, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=176, Percent_Identity=29.5454545454545, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580925, Length=177, Percent_Identity=25.9887005649718, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648944, Length=236, Percent_Identity=27.1186440677966, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584744, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574402, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24649181, Length=181, Percent_Identity=25.414364640884, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=25.8536585365854, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=25.8536585365854, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26652; Mature: 26652
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSPPNLNKLKLAFITGATKGIGRSTAITFAKAGWDLILLSRNMDLLEKLKSELLTTKSK CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHCCHHH ISLVKCDLANPIGIENCVGEAIEKYGCPSVLINNAGCAFNGSLVEMDFGQWEQTIQINLT EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEECCCEEEECCCCCCEEEEEEHH SVFQICSSIIPQMRKNGGLVINVSSHASYNAFPQWGAYCISKSALTMFTKCLREEERSNS HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC IRACTITLGSVNTPLWDSESINSDFDRTSMLSSNKVSDTILYMAQQPESQLIEDLTLMPS EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHEECCC GGAF CCCC >Mature Secondary Structure MKSPPNLNKLKLAFITGATKGIGRSTAITFAKAGWDLILLSRNMDLLEKLKSELLTTKSK CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHCCHHH ISLVKCDLANPIGIENCVGEAIEKYGCPSVLINNAGCAFNGSLVEMDFGQWEQTIQINLT EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEECCCEEEECCCCCCEEEEEEHH SVFQICSSIIPQMRKNGGLVINVSSHASYNAFPQWGAYCISKSALTMFTKCLREEERSNS HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC IRACTITLGSVNTPLWDSESINSDFDRTSMLSSNKVSDTILYMAQQPESQLIEDLTLMPS EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHEECCC GGAF CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA