Click here to switch to the map view.

The map label for this gene is frr

Identifier: 78778906

GI number: 78778906

Start: 487482

End: 488030

Strand: Reverse

Name: frr

Synonym: PMT9312_0521

Alternate gene names: 78778906

Gene position: 488030-487482 (Counterclockwise)

Preceding gene: 78778907

Following gene: 78778905

Centisome position: 28.55

GC content: 30.05

Gene sequence:

>549_bases
ATGAAAGAACAAGAAATTCAAGAAAACATGAATAAAAGTATTGAAGCCACGCAAAGAAACTTTAATACTATAAGAACTGG
GAGAGCTAATGCTTCATTGTTAGACAGAATAAGTGTTGAGTACTATGGTGCAGAAACACCAATCAAATCTCTTGCCACAA
TAAGTACTGTTGATTCACAAACAATTTCAATACAACCTTTCGATATTTCATGTTTGCAAGCTATAGAAAAATCTATTTCC
ATGAGCGATTTAGGTATTACTCCAAATAATGATGGTAAAGTAATAAGAATAAATGTTCCTCCCTTAACAGAGGAAAGAAG
AAAGGAATTTTGTAAATTAGCTTCTAAATATGCAGAGGAAGGAAAAGTAGCTTTAAGGAATATTAGAAGAGATGCTGTTG
ATAAAGAAAAAAAAGACGAAAAAGATGGTCTTATTTCTATTGACGAATCAAGAGATAATCAATCTGAAATTCAGAAAATT
ACCAATAAATTTATTGCCTTAATAGAAACTAAATTATCCGAAAAAGAGAAGGAAATTCTAAAAGTTTGA

Upstream 100 bases:

>100_bases
ATGGTATTTGATATATTCAAAAAAGGGAACATCTCTAAAGCTGTCGCTGGGGAGGCTATAGGTTCATTAATTAGTTAAAG
CTTATTTAAATTTTTTTATT

Downstream 100 bases:

>100_bases
AAGAATTTGATGTCGTAATAATTGGTGGAGGTTTATCAGGATCTTCTTCCGCTCTTAACCTATCAAAAAAAGGATATTCT
GTTCTAGTTATTGAAAAAGA

Product: ribosome recycling factor

Products: NA

Alternate protein names: RRF; Ribosome-releasing factor [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKEQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSIS
MSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKI
TNKFIALIETKLSEKEKEILKV

Sequences:

>Translated_182_residues
MKEQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSIS
MSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKI
TNKFIALIETKLSEKEKEILKV
>Mature_182_residues
MKEQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSIS
MSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKI
TNKFIALIETKLSEKEKEILKV

Specific function: Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another [H]

COG id: COG0233

COG function: function code J; Ribosome recycling factor

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RRF family [H]

Homologues:

Organism=Homo sapiens, GI20270317, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1786368, Length=180, Percent_Identity=47.7777777777778, Blast_Score=164, Evalue=4e-42,

Paralogues:

None

Copy number: 840 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002661
- InterPro:   IPR015998 [H]

Pfam domain/function: PF01765 RRF [H]

EC number: NA

Molecular weight: Translated: 20635; Mature: 20635

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCHHHHHHHHHCCCC
TISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEE
EEEECCCCHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
GKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEIL
HHHHHHHHHHHHHCHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KV
CC
>Mature Secondary Structure
MKEQEIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCHHHHHHHHHCCCC
TISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEE
EEEECCCCHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
GKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIETKLSEKEKEIL
HHHHHHHHHHHHHCHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA