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The map label for this gene is yciC [H]

Identifier: 78778876

GI number: 78778876

Start: 459602

End: 460690

Strand: Reverse

Name: yciC [H]

Synonym: PMT9312_0491

Alternate gene names: 78778876

Gene position: 460690-459602 (Counterclockwise)

Preceding gene: 78778877

Following gene: 78778875

Centisome position: 26.95

GC content: 30.39

Gene sequence:

>1089_bases
ATGTCTAAAAAGTTATTACCAGTTACGATTATTAGTGGATTTTTAGGTTCTGGCAAAACCACATTATTAAATCATATTTT
AAAAAATCAAGTTGGTATTAAAACAGCCGTTTTAGTTAATGAATTCGGAGAGATTGGAATAGATAATGACTTAATCATAG
AAGGCTCAGAAGATATGATCGAATTAAATAATGGCTGTATATGTTGCTCTATTAATGGCGAATTATTAAATACAGTATCA
AAAGTTTTAGAAAGATCTGAAAAACTAGACTATTTAATTGTTGAGACAACTGGACTTGCTGATCCATTACCAGTAGCAAT
GACTTTTGCAGCTGGCGATCTCAGAGAAAAAGTAAGATTAGATTCAATTATCACTGTAATCGATGGAGAAAATTTTGATT
TTGAAATTAATAATAAAAGTGTTTCCTATTCTCAAATTTTATACGGAGATATCATCCTTTTAAATAAGTGTGATTTAGTG
AACGAAGAACAATTAAAGAAAGTAGAAAAGTTTATAAATAAGATAAAAAAAGAACCTAGGATCTTGCGATCAACCAATAG
TGAAGTTGGATTACAAACAATAATGAGCGTTGGTCTTTTTGAGACAGATACTTTTCAATTCGAGAAGGAAAAGAAAAATG
TAAAAGATAATTCACACGATCACTCTTCTCATTCACACGATCACTCTTCTCATTTACACGATCACTCTTCTCATTCACAC
GATCACTCTTCTCATTTACACGATCACTCTTCTCATTCACACGATCACTCTTCTCATTCAAATCATTTGATCAATAATAT
CGAAGGGTTTACATCAGTTTCTTATGAGACAGTTGAACCATTCTCCTTAAGGAAGTTTCAATATTTCTTAGATAATCAAA
TATCACAAAATGTATTTAGAGCGAAAGGAATATTATGGTTTATGGAAAGTGAAAGAAAACACATTTTTCACCTGTCTGGG
AAACGGTTTTCTCTAGATGATGAAGAATGGACAAAAGATAAATCTAACAAAATAGTATTAATTGGAAAGAACTTAGATCA
TCAAACTATTAAAAATCAACTTTCATCATGTAGATTTAATTCAGACTAG

Upstream 100 bases:

>100_bases
GAGGCATTACAAATTTGGATCAAACATTAGCTTCAGAAATCAATAAAATTTTCGATCAATAAAATTACAAATTTGAATTT
ATTTAAAACAATTCGTAAAA

Downstream 100 bases:

>100_bases
AGCAAATAGTAGGACTTAATTAATTTTTGAAAATACTTATTAATGGATTTAAAAAAGCATTAACCGAATTAAAACTTTTT
TATATCACTTCGTTTATTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSKKLLPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNDLIIEGSEDMIELNNGCICCSINGELLNTVS
KVLERSEKLDYLIVETTGLADPLPVAMTFAAGDLREKVRLDSIITVIDGENFDFEINNKSVSYSQILYGDIILLNKCDLV
NEEQLKKVEKFINKIKKEPRILRSTNSEVGLQTIMSVGLFETDTFQFEKEKKNVKDNSHDHSSHSHDHSSHLHDHSSHSH
DHSSHLHDHSSHSHDHSSHSNHLINNIEGFTSVSYETVEPFSLRKFQYFLDNQISQNVFRAKGILWFMESERKHIFHLSG
KRFSLDDEEWTKDKSNKIVLIGKNLDHQTIKNQLSSCRFNSD

Sequences:

>Translated_362_residues
MSKKLLPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNDLIIEGSEDMIELNNGCICCSINGELLNTVS
KVLERSEKLDYLIVETTGLADPLPVAMTFAAGDLREKVRLDSIITVIDGENFDFEINNKSVSYSQILYGDIILLNKCDLV
NEEQLKKVEKFINKIKKEPRILRSTNSEVGLQTIMSVGLFETDTFQFEKEKKNVKDNSHDHSSHSHDHSSHLHDHSSHSH
DHSSHLHDHSSHSHDHSSHSNHLINNIEGFTSVSYETVEPFSLRKFQYFLDNQISQNVFRAKGILWFMESERKHIFHLSG
KRFSLDDEEWTKDKSNKIVLIGKNLDHQTIKNQLSSCRFNSD
>Mature_361_residues
SKKLLPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNDLIIEGSEDMIELNNGCICCSINGELLNTVSK
VLERSEKLDYLIVETTGLADPLPVAMTFAAGDLREKVRLDSIITVIDGENFDFEINNKSVSYSQILYGDIILLNKCDLVN
EEQLKKVEKFINKIKKEPRILRSTNSEVGLQTIMSVGLFETDTFQFEKEKKNVKDNSHDHSSHSHDHSSHLHDHSSHSHD
HSSHLHDHSSHSHDHSSHSNHLINNIEGFTSVSYETVEPFSLRKFQYFLDNQISQNVFRAKGILWFMESERKHIFHLSGK
RFSLDDEEWTKDKSNKIVLIGKNLDHQTIKNQLSSCRFNSD

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=366, Percent_Identity=30.8743169398907, Blast_Score=141, Evalue=9e-34,
Organism=Homo sapiens, GI126722884, Length=366, Percent_Identity=30.8743169398907, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI148727351, Length=366, Percent_Identity=30.8743169398907, Blast_Score=135, Evalue=4e-32,
Organism=Homo sapiens, GI223941779, Length=197, Percent_Identity=40.6091370558376, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI146231952, Length=368, Percent_Identity=31.25, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI223941776, Length=370, Percent_Identity=29.1891891891892, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI119120938, Length=129, Percent_Identity=42.6356589147287, Blast_Score=104, Evalue=2e-22,
Organism=Escherichia coli, GI87082430, Length=363, Percent_Identity=27.8236914600551, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788499, Length=224, Percent_Identity=29.0178571428571, Blast_Score=92, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6324356, Length=226, Percent_Identity=31.858407079646, Blast_Score=109, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 41122; Mature: 40991

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLLPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNDLIIEGSEDMI
CCCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEE
ELNNGCICCSINGELLNTVSKVLERSEKLDYLIVETTGLADPLPVAMTFAAGDLREKVRL
EECCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHH
DSIITVIDGENFDFEINNKSVSYSQILYGDIILLNKCDLVNEEQLKKVEKFINKIKKEPR
HHEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCH
ILRSTNSEVGLQTIMSVGLFETDTFQFEKEKKNVKDNSHDHSSHSHDHSSHLHDHSSHSH
HHHCCCCHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCC
DHSSHLHDHSSHSHDHSSHSNHLINNIEGFTSVSYETVEPFSLRKFQYFLDNQISQNVFR
CCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AKGILWFMESERKHIFHLSGKRFSLDDEEWTKDKSNKIVLIGKNLDHQTIKNQLSSCRFN
HCCEEEEEECCCCEEEEECCCEECCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
SD
CC
>Mature Secondary Structure 
SKKLLPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNDLIIEGSEDMI
CCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEE
ELNNGCICCSINGELLNTVSKVLERSEKLDYLIVETTGLADPLPVAMTFAAGDLREKVRL
EECCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHH
DSIITVIDGENFDFEINNKSVSYSQILYGDIILLNKCDLVNEEQLKKVEKFINKIKKEPR
HHEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCH
ILRSTNSEVGLQTIMSVGLFETDTFQFEKEKKNVKDNSHDHSSHSHDHSSHLHDHSSHSH
HHHCCCCHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCC
DHSSHLHDHSSHSHDHSSHSNHLINNIEGFTSVSYETVEPFSLRKFQYFLDNQISQNVFR
CCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AKGILWFMESERKHIFHLSGKRFSLDDEEWTKDKSNKIVLIGKNLDHQTIKNQLSSCRFN
HCCEEEEEECCCCEEEEECCCEECCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
SD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]