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The map label for this gene is ldcA [C]

Identifier: 78778840

GI number: 78778840

Start: 429907

End: 430776

Strand: Reverse

Name: ldcA [C]

Synonym: PMT9312_0455

Alternate gene names: 78778840

Gene position: 430776-429907 (Counterclockwise)

Preceding gene: 78778841

Following gene: 78778838

Centisome position: 25.2

GC content: 33.45

Gene sequence:

>870_bases
ATGGTTTTTAGATTAAAAAAAGGTGATCTAATCGATATTGTAGCTCCAGGCTCCTTTATTGATGAAGAAGAAAATTTTCA
AAAAGGCATAGAAATCATAAAAAACTGGGGCTTAGAAATTAATGAGAATAATTCTCTATCAAAAAAATTTGGTTATTTTG
CAGGTGATGATCTAACTAGATTTGAAGAACTGGAAAAAGCACAAAATAGTAATCTAATCATTTTTGCAAAAGGAGGATGG
GGTTCAGCAAGACTATTAGAAAAAGAACCTTCTTGGCAGCATGGTTTAATGCTTGGATTCTCAGATACATGTTCTTTATT
ACTATCTAAATATTCTCAAGGATTTCTTGGTTCTATTCATGGGCCCATGGTTACAAGCCTTTTCAGGGAGCCAGAGTGGA
GTCTTGAGAGATTAAGAAATTTACTTTTTGAGGGATATGTTGAGGACATTAGAGGAATTCCTTTAAGAGGTGGAAAAGCG
AAAGGAGATATTATAGTTTCTAACTTAACTATTGCTACTTTTTTAATTGGTACTAATCACTTCCCAGATTTCAGAGGGAA
AATAATAATTTTTGAAGATATTAATGAAGATATTTATAAAATTGATCGCATGTTGACTTACCTCAAGATGACTAAAACAC
TTACTGAAATTGCGGGTATTGGATTCGGGAGTTTTTCTAATAATTCCTTCGACCTTGAATGGAAAGATTTACTAAAAAAC
TGCATTATGGAAAGACTCCAAGAGTTTGATTTTCCTATTCTTTTTGACCTCCCCATAGGCCACATATCAGGGAATGCATG
CATCCCTTTAGGGTATGAAGCAACCTTAAATGGCGATAACGGCATTCTTAGTATCAATAAACCTTTTTAA

Upstream 100 bases:

>100_bases
AAAGCAATCAATAAAAAATATTGGGAATCACTTCAAAAATCAATCAATTTATGGAGGAGTCCTTTTATTAGGAATCATTA
TTGCCTCATAAATTCTAAAT

Downstream 100 bases:

>100_bases
CTAGGAGTTGAGTTCTTCACAAAAAGTTTTGCTATTTTCAAATCTATAGGGGACGTAATTTTTATATTTGAATAAGTTCC
TTCAATGATTTTTACTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MVFRLKKGDLIDIVAPGSFIDEEENFQKGIEIIKNWGLEINENNSLSKKFGYFAGDDLTRFEELEKAQNSNLIIFAKGGW
GSARLLEKEPSWQHGLMLGFSDTCSLLLSKYSQGFLGSIHGPMVTSLFREPEWSLERLRNLLFEGYVEDIRGIPLRGGKA
KGDIIVSNLTIATFLIGTNHFPDFRGKIIIFEDINEDIYKIDRMLTYLKMTKTLTEIAGIGFGSFSNNSFDLEWKDLLKN
CIMERLQEFDFPILFDLPIGHISGNACIPLGYEATLNGDNGILSINKPF

Sequences:

>Translated_289_residues
MVFRLKKGDLIDIVAPGSFIDEEENFQKGIEIIKNWGLEINENNSLSKKFGYFAGDDLTRFEELEKAQNSNLIIFAKGGW
GSARLLEKEPSWQHGLMLGFSDTCSLLLSKYSQGFLGSIHGPMVTSLFREPEWSLERLRNLLFEGYVEDIRGIPLRGGKA
KGDIIVSNLTIATFLIGTNHFPDFRGKIIIFEDINEDIYKIDRMLTYLKMTKTLTEIAGIGFGSFSNNSFDLEWKDLLKN
CIMERLQEFDFPILFDLPIGHISGNACIPLGYEATLNGDNGILSINKPF
>Mature_289_residues
MVFRLKKGDLIDIVAPGSFIDEEENFQKGIEIIKNWGLEINENNSLSKKFGYFAGDDLTRFEELEKAQNSNLIIFAKGGW
GSARLLEKEPSWQHGLMLGFSDTCSLLLSKYSQGFLGSIHGPMVTSLFREPEWSLERLRNLLFEGYVEDIRGIPLRGGKA
KGDIIVSNLTIATFLIGTNHFPDFRGKIIIFEDINEDIYKIDRMLTYLKMTKTLTEIAGIGFGSFSNNSFDLEWKDLLKN
CIMERLQEFDFPILFDLPIGHISGNACIPLGYEATLNGDNGILSINKPF

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=294, Percent_Identity=26.1904761904762, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 32653; Mature: 32653

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRLKKGDLIDIVAPGSFIDEEENFQKGIEIIKNWGLEINENNSLSKKFGYFAGDDLTR
CEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHCCCCCCCCHHH
FEELEKAQNSNLIIFAKGGWGSARLLEKEPSWQHGLMLGFSDTCSLLLSKYSQGFLGSIH
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCC
GPMVTSLFREPEWSLERLRNLLFEGYVEDIRGIPLRGGKAKGDIIVSNLTIATFLIGTNH
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCC
FPDFRGKIIIFEDINEDIYKIDRMLTYLKMTKTLTEIAGIGFGSFSNNSFDLEWKDLLKN
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
CIMERLQEFDFPILFDLPIGHISGNACIPLGYEATLNGDNGILSINKPF
HHHHHHHHCCCCEEEECCCCEECCCEEEEECCEEEECCCCCEEEECCCC
>Mature Secondary Structure
MVFRLKKGDLIDIVAPGSFIDEEENFQKGIEIIKNWGLEINENNSLSKKFGYFAGDDLTR
CEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHCCCCCCCCHHH
FEELEKAQNSNLIIFAKGGWGSARLLEKEPSWQHGLMLGFSDTCSLLLSKYSQGFLGSIH
HHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCC
GPMVTSLFREPEWSLERLRNLLFEGYVEDIRGIPLRGGKAKGDIIVSNLTIATFLIGTNH
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEEEEECCCC
FPDFRGKIIIFEDINEDIYKIDRMLTYLKMTKTLTEIAGIGFGSFSNNSFDLEWKDLLKN
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
CIMERLQEFDFPILFDLPIGHISGNACIPLGYEATLNGDNGILSINKPF
HHHHHHHHCCCCEEEECCCCEECCCEEEEECCEEEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]