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The map label for this gene is yrbE [H]

Identifier: 78778660

GI number: 78778660

Start: 262560

End: 263564

Strand: Reverse

Name: yrbE [H]

Synonym: PMT9312_0275

Alternate gene names: 78778660

Gene position: 263564-262560 (Counterclockwise)

Preceding gene: 78778661

Following gene: 78778657

Centisome position: 15.42

GC content: 36.12

Gene sequence:

>1005_bases
ATGCACCCAACCTCATCCCCCGTAAAGGTTGGAGTCATAGGTATAGGAAATATGGGCTGGCATCATGCTCGAGTACTTAG
TTTACTTAAAGATGCAAATCTCGTTGGAGTTGCAGATCCAAATGAAGAGAGAGGCAAATTAGCTATTGAGCAATTTCAAT
GTGAATGGTTCAAAGATTATAAAGACTTAATTCCTAAAGTTGATGCTATATGTATCGCTGTCCCAACACTACTACATCAC
AAAGTTGGATTGGATTGTCTAAAGGGAGGTTCCAACGTTCTTATTGAAAAACCAATTGCAGCTAACGAGTCAGAAGCACA
ATCTTTAATAGATGCCTCTAATGCAAGTAATTGTCTATTACAAGTTGGCCATATTGAAAGATTTAATCCCGCTTTTAGGG
AGCTAAATAAAATAGTGCATAATGAAGAAATTGTTGTTTTGGAAGCAAGAAGACATAGTCCTCACGCAGATAGAGCAAAT
GATGTATCGGTAGTAATGGATTTAATGATTCATGATATTGATCTTGTTTTAGAGCTTGTAAACTCAAAAATACAAAAATT
AGCAGCTGTTGGAGGCAGAAATAGTGAAGGATTAATAGATTATGTAAATGCCACTTTGGTTTTTAAAAATAATGTTATTG
CAAGCTTAACTGCAAGCAAAATGAGCCATAAAAAAATTAGAAGTTTAAGCGCTCACTGTCAAAATGGGCTTGTAGAAACT
GATTTCTTAAATCACTCTCTACAAATCCATCGAAAGTCACATGAATCATATACTGCAGAGCATGGCGAATTAGTTTATAG
GAATGACGGGTATGTCGAAGAAGTTAGCACAACTTCCATTGAGCCTCTTTATGCAGAATTGGAACATTTTCTTAAATGCG
TTCAAGGCAAAGAAACACCTGAGGTAGATGGTGAGCAGGCCTCAAGAGCTTTAAAAATAGCAGATTTTATAGAGAGTGCT
GTAGAAAATTCTGGAGATGCGATTTTACTTGAAAATCCATTCTAA

Upstream 100 bases:

>100_bases
TGTCAGGTCCAAAAATTGATCGTGTTAAAATAATTCTTCCCAAAAGCTAAATGGTGCTTCCAATAGAGGATAATAATACT
TAAATATATGGATTTAAGTT

Downstream 100 bases:

>100_bases
GACTAACTATCTAAACGAAAAGATTTTATTTAAATCCAACTGCAGCTTGCCAAACAAATACCAATAAAAAGAAAAATAAA
GGTATTAATGGAAGAACATC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MHPTSSPVKVGVIGIGNMGWHHARVLSLLKDANLVGVADPNEERGKLAIEQFQCEWFKDYKDLIPKVDAICIAVPTLLHH
KVGLDCLKGGSNVLIEKPIAANESEAQSLIDASNASNCLLQVGHIERFNPAFRELNKIVHNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFKNNVIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKSHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKETPEVDGEQASRALKIADFIESA
VENSGDAILLENPF

Sequences:

>Translated_334_residues
MHPTSSPVKVGVIGIGNMGWHHARVLSLLKDANLVGVADPNEERGKLAIEQFQCEWFKDYKDLIPKVDAICIAVPTLLHH
KVGLDCLKGGSNVLIEKPIAANESEAQSLIDASNASNCLLQVGHIERFNPAFRELNKIVHNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFKNNVIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKSHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKETPEVDGEQASRALKIADFIESA
VENSGDAILLENPF
>Mature_334_residues
MHPTSSPVKVGVIGIGNMGWHHARVLSLLKDANLVGVADPNEERGKLAIEQFQCEWFKDYKDLIPKVDAICIAVPTLLHH
KVGLDCLKGGSNVLIEKPIAANESEAQSLIDASNASNCLLQVGHIERFNPAFRELNKIVHNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFKNNVIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKSHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKETPEVDGEQASRALKIADFIESA
VENSGDAILLENPF

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Drosophila melanogaster, GI24581117, Length=171, Percent_Identity=26.9005847953216, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: NA

Molecular weight: Translated: 36870; Mature: 36870

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPTSSPVKVGVIGIGNMGWHHARVLSLLKDANLVGVADPNEERGKLAIEQFQCEWFKDY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
KDLIPKVDAICIAVPTLLHHKVGLDCLKGGSNVLIEKPIAANESEAQSLIDASNASNCLL
HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEE
QVGHIERFNPAFRELNKIVHNEEIVVLEARRHSPHADRANDVSVVMDLMIHDIDLVLELV
EECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NSKIQKLAAVGGRNSEGLIDYVNATLVFKNNVIASLTASKMSHKKIRSLSAHCQNGLVET
HHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHCCCEEH
DFLNHSLQIHRKSHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKETP
HHHCCHHEEEECCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
EVDGEQASRALKIADFIESAVENSGDAILLENPF
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MHPTSSPVKVGVIGIGNMGWHHARVLSLLKDANLVGVADPNEERGKLAIEQFQCEWFKDY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
KDLIPKVDAICIAVPTLLHHKVGLDCLKGGSNVLIEKPIAANESEAQSLIDASNASNCLL
HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEE
QVGHIERFNPAFRELNKIVHNEEIVVLEARRHSPHADRANDVSVVMDLMIHDIDLVLELV
EECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NSKIQKLAAVGGRNSEGLIDYVNATLVFKNNVIASLTASKMSHKKIRSLSAHCQNGLVET
HHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHCCCEEH
DFLNHSLQIHRKSHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKETP
HHHCCHHEEEECCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
EVDGEQASRALKIADFIESAVENSGDAILLENPF
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]